diff --git a/CHANGELOG.md b/CHANGELOG.md
index 790022d5..8e6ed5e6 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -27,6 +27,7 @@ Initial release of nf-core/multiplesequencealign, created with the [nf-core](htt
 [#54](https://github.com/nf-core/multiplesequencealign/issues/54) - Update modules versions from nf-core tools.
 [#80](https://github.com/nf-core/multiplesequencealign/pull/80) - Update modules versions from nf-core tools with nf-test.
 [#32](https://github.com/nf-core/multiplesequencealign/issues/32) - Update Stats workflow with nf-core modules for merging.
+[#81](https://github.com/nf-core/multiplesequencealign/pull/81) - Update Eval workflow with nf-core modules for merging.
 
 ### `Dependencies`
 
diff --git a/conf/modules.config b/conf/modules.config
index 2d420508..b360484d 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -104,7 +104,7 @@ process {
             path: { "${params.outdir}/evaluation/${task.process.tokenize(':')[-1]}" },
             mode: params.publish_dir_mode,
             saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-        ]    
+        ]
     }
 
     withName: 'TCOFFEE_ALNCOMPARE_TC'{
@@ -114,7 +114,7 @@ process {
             path: { "${params.outdir}/evaluation/${task.process.tokenize(':')[-1]}" },
             mode: params.publish_dir_mode,
             saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-        ]    
+        ]
     }
 
     withName: 'TCOFFEE_IRMSD'{
@@ -123,7 +123,7 @@ process {
             path: { "${params.outdir}/evaluation/${task.process.tokenize(':')[-1]}" },
             mode: params.publish_dir_mode,
             saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-        ]    
+        ]
     }
 
     withName: 'PARSE_IRMSD'{
@@ -132,7 +132,7 @@ process {
             path: { "${params.outdir}/evaluation/${task.process.tokenize(':')[-1]}" },
             mode: params.publish_dir_mode,
             saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-        ]    
+        ]
     }
 
     withName: "CONCAT_SEQSTATS"{
@@ -152,7 +152,7 @@ process {
             saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
         ]
     }
-    
+
     withName: "CONCAT_TC"{
         ext.prefix = { "summary_tc" }
         publishDir = [
@@ -161,7 +161,7 @@ process {
             saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
         ]
     }
-    
+
     withName: "CONCAT_IRMSD"{
         ext.prefix = { "summary_irmsd" }
         publishDir = [
diff --git a/modules.json b/modules.json
index 7ff73a55..e2f7ee08 100644
--- a/modules.json
+++ b/modules.json
@@ -8,138 +8,100 @@
                     "clustalo/align": {
                         "branch": "master",
                         "git_sha": "1a8cc5bb3ea3348c552abb23fb380a6390fc0666",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "clustalo/guidetree": {
                         "branch": "master",
                         "git_sha": "1f253ec05723293df7757af8769f8389b7a1884e",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "csvtk/concat": {
                         "branch": "master",
                         "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "csvtk/join": {
                         "branch": "master",
                         "git_sha": "b2420a8bbd8af137380aa0a0c2e9a92456e5bb21",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "custom/dumpsoftwareversions": {
                         "branch": "master",
                         "git_sha": "bba7e362e4afead70653f84d8700588ea28d0f9e",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "famsa/align": {
                         "branch": "master",
                         "git_sha": "36fc6f7dfc7bf0b4226681df58486ab1948f7df2",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "famsa/guidetree": {
                         "branch": "master",
                         "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "fastqc": {
                         "branch": "master",
                         "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "kalign/align": {
                         "branch": "master",
                         "git_sha": "899b6b2f3e91eb0620458131fed1373c82f18ff1",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "learnmsa/align": {
                         "branch": "master",
                         "git_sha": "7ca2d77c844e4d0272da08f2ff56ce5cac14e456",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "mafft": {
                         "branch": "master",
                         "git_sha": "c0a22acfb0accdf8ab3ea4f755a4865d538dc53f",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "multiqc": {
                         "branch": "master",
                         "git_sha": "1537442a7be4a78efa3d1ff700a923c627bbda5d",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "muscle5/super5": {
                         "branch": "master",
                         "git_sha": "f883758bfbfd0dea01013750581d378e8c98aafc",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "tcoffee/align": {
                         "branch": "master",
                         "git_sha": "c83c78835ca6d7a55b3f200718d887cbc7149d37",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "tcoffee/alncompare": {
                         "branch": "master",
                         "git_sha": "74ee27ccbc2a492a8479323b212b2a42317c3109",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "tcoffee/irmsd": {
                         "branch": "master",
                         "git_sha": "5074bd37c59454497e790d9210e2f7a876f2c24f",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "tcoffee/seqreformat": {
                         "branch": "master",
                         "git_sha": "f759fd45ecabb40c761df1338a4bb3851171a7f7",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "untar": {
                         "branch": "master",
                         "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "zip": {
                         "branch": "master",
                         "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     }
                 }
             }
         }
     }
-}
\ No newline at end of file
+}
diff --git a/modules/local/parse_irmsd.nf b/modules/local/parse_irmsd.nf
index e226407e..8de491fb 100644
--- a/modules/local/parse_irmsd.nf
+++ b/modules/local/parse_irmsd.nf
@@ -18,7 +18,7 @@ process PARSE_IRMSD {
     def values = meta.values().join(",")
     """
     # Parse irmsd file
-    grep "TOTAL" $infile > ${prefix}.total_irmsd 
+    grep "TOTAL" $infile > ${prefix}.total_irmsd
 
     parsers.py -i ${prefix}.total_irmsd -o ${prefix}.scores.csv