Merge pull request #150 from luisas/prepare-release

Prepare release
nf-core · Sep 19, 2024 · 83b2cf2 · 83b2cf2
2 parents adc2e94 + fef23cc
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -36,6 +36,7 @@ Initial release of nf-core/multiplesequencealign, created with the [nf-core](htt
 - [[#145](https://github.com/nf-core/multiplesequencealign/pull/145)] - Add consensus MSA.
 - [[#147](https://github.com/nf-core/multiplesequencealign/pull/147)] - Add small testing profile + some fixes of the shiny app.
 - [[#148](https://github.com/nf-core/multiplesequencealign/pull/148)] - Add UPP module.
+- [[#150](https://github.com/nf-core/multiplesequencealign/pull/150)] - Update modules and readme for pre-release.
 
 ### `Fixed`
 

diff --git a/README.md b/README.md
@@ -107,7 +107,7 @@ For details on how to add your favourite guide tree, MSA or evaluation step in n
 
 nf-core/multiplesequencealign was originally written by Luisa Santus ([@luisas](https://github.com/luisas)) and Jose Espinosa-Carrasco ([@JoseEspinosa](https://github.com/JoseEspinosa)) from The Comparative Bioinformatics Group at The Centre for Genomic Regulation, Spain.
 
-The following people have significantly contributed to the development of the pipeline and its modules: Leon Rauschning ([@lrauschning](https://github.com/lrauschning)), Alessio Vignoli ([@alessiovignoli](https://github.com/alessiovignoli)) and Leila Mansouri ([@l-mansouri](https://github.com/l-mansouri)).
+The following people have significantly contributed to the development of the pipeline and its modules: Leon Rauschning ([@lrauschning](https://github.com/lrauschning)), Alessio Vignoli ([@alessiovignoli](https://github.com/alessiovignoli)), Igor Trujnara ([@itrujnara](https://github.com/itrujnara)) and Leila Mansouri ([@l-mansouri](https://github.com/l-mansouri)).
 
 ## Contributions and Support
 

diff --git a/modules.json b/modules.json
@@ -43,7 +43,7 @@
                     },
                     "kalign/align": {
                         "branch": "master",
-                        "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
+                        "git_sha": "a5c02a8c0f6db792c5420aec5a66f75024da4b17",
                         "installed_by": ["modules"],
                         "patch": "modules/nf-core/kalign/align/kalign-align.diff"
                     },
@@ -94,32 +94,32 @@
                     },
                     "tcoffee/align": {
                         "branch": "master",
-                        "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
+                        "git_sha": "6453bce4cf3c43f455e7528bd4e12c4a10268904",
                         "installed_by": ["modules"]
                     },
                     "tcoffee/alncompare": {
                         "branch": "master",
-                        "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
+                        "git_sha": "6453bce4cf3c43f455e7528bd4e12c4a10268904",
                         "installed_by": ["modules"]
                     },
                     "tcoffee/consensus": {
                         "branch": "master",
-                        "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
+                        "git_sha": "6453bce4cf3c43f455e7528bd4e12c4a10268904",
                         "installed_by": ["modules"]
                     },
                     "tcoffee/irmsd": {
                         "branch": "master",
-                        "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
+                        "git_sha": "6453bce4cf3c43f455e7528bd4e12c4a10268904",
                         "installed_by": ["modules"]
                     },
                     "tcoffee/seqreformat": {
                         "branch": "master",
-                        "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
+                        "git_sha": "6453bce4cf3c43f455e7528bd4e12c4a10268904",
                         "installed_by": ["modules"]
                     },
                     "tcoffee/tcs": {
                         "branch": "master",
-                        "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
+                        "git_sha": "6453bce4cf3c43f455e7528bd4e12c4a10268904",
                         "installed_by": ["modules"]
                     },
                     "untar": {

diff --git a/modules/nf-core/kalign/align/kalign-align.diff b/modules/nf-core/kalign/align/kalign-align.diff
diff --git a/modules/nf-core/kalign/align/main.nf b/modules/nf-core/kalign/align/main.nf
diff --git a/modules/nf-core/tcoffee/align/main.nf b/modules/nf-core/tcoffee/align/main.nf
diff --git a/modules/nf-core/tcoffee/align/tests/main.nf.test b/modules/nf-core/tcoffee/align/tests/main.nf.test