diff --git a/modules.json b/modules.json index f8210a98..5d66f17c 100644 --- a/modules.json +++ b/modules.json @@ -78,7 +78,8 @@ "dragmap/align": { "branch": "master", "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c", - "installed_by": ["modules"] + "installed_by": ["modules"], + "patch": "modules/nf-core/dragmap/align/dragmap-align.diff" }, "dragmap/hashtable": { "branch": "master", diff --git a/modules/nf-core/dragmap/align/dragmap-align.diff b/modules/nf-core/dragmap/align/dragmap-align.diff new file mode 100644 index 00000000..7c472c71 --- /dev/null +++ b/modules/nf-core/dragmap/align/dragmap-align.diff @@ -0,0 +1,19 @@ +Changes in module 'nf-core/dragmap/align' +--- modules/nf-core/dragmap/align/main.nf ++++ modules/nf-core/dragmap/align/main.nf +@@ -2,10 +2,10 @@ + tag "$meta.id" + label 'process_high' + +- conda "bioconda::dragmap=1.3.0 bioconda::samtools=1.16.1 conda-forge::pigz=2.3.4" ++ conda "bioconda::dragmap=1.2.1 bioconda::samtools=1.15.1 conda-forge::pigz=2.3.4" + container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? +- 'https://depot.galaxyproject.org/singularity/mulled-v2-580d344d9d4a496cd403932da8765f9e0187774d:bb7e33c2ede38421063b8379a5fb3453645bb047-0': +- 'quay.io/biocontainers/mulled-v2-580d344d9d4a496cd403932da8765f9e0187774d:bb7e33c2ede38421063b8379a5fb3453645bb047-0' }" ++ 'https://depot.galaxyproject.org/singularity/mulled-v2-580d344d9d4a496cd403932da8765f9e0187774d:5ebebbc128cd624282eaa37d2c7fe01505a91a69-0': ++ 'quay.io/biocontainers/mulled-v2-580d344d9d4a496cd403932da8765f9e0187774d:5ebebbc128cd624282eaa37d2c7fe01505a91a69-0' }" + + input: + tuple val(meta) , path(reads) + +************************************************************ diff --git a/modules/nf-core/dragmap/align/main.nf b/modules/nf-core/dragmap/align/main.nf index 22e4b7c1..6138f583 100644 --- a/modules/nf-core/dragmap/align/main.nf +++ b/modules/nf-core/dragmap/align/main.nf @@ -2,10 +2,10 @@ process DRAGMAP_ALIGN { tag "$meta.id" label 'process_high' - conda "bioconda::dragmap=1.3.0 bioconda::samtools=1.16.1 conda-forge::pigz=2.3.4" + conda "bioconda::dragmap=1.2.1 bioconda::samtools=1.15.1 conda-forge::pigz=2.3.4" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/mulled-v2-580d344d9d4a496cd403932da8765f9e0187774d:bb7e33c2ede38421063b8379a5fb3453645bb047-0': - 'quay.io/biocontainers/mulled-v2-580d344d9d4a496cd403932da8765f9e0187774d:bb7e33c2ede38421063b8379a5fb3453645bb047-0' }" + 'https://depot.galaxyproject.org/singularity/mulled-v2-580d344d9d4a496cd403932da8765f9e0187774d:5ebebbc128cd624282eaa37d2c7fe01505a91a69-0': + 'quay.io/biocontainers/mulled-v2-580d344d9d4a496cd403932da8765f9e0187774d:5ebebbc128cd624282eaa37d2c7fe01505a91a69-0' }" input: tuple val(meta) , path(reads)