development.md

Tips for development

Channel management and combination

All channels need to be identified by a meta map. To follow which information is available, the meta argument is suffixed with a combination of the following capital letters:

• I : individual id
• P : panel id
• R : region used
• M : map used
• T : tool used
• G : reference genome used (is it needed ?)
• S : simulation (depth or genotype array)

Therefore, the following channel operation example includes a meta map containing the panel id with the region and tool used:

ch_panel_for_impute.map {
    metaPRT, vcf, index -> ...
}

Release names

The names of releases are composed of a color and a dog breed.