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Add umicollapse as an alternative to umi-tools #3181

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Add umicollapse as an alternative to umi-tools

Add umicollapse as an alternative to umi-tools #3181

Run time

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Job Run time
Check for changes
20s
Run tests (tests/default.nf.test docker NF-24.04.2)
16m 5s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse/tests/main.nf.test docker NF-24.04.2)
6m 25s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
13m 27s
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
10m 10s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
15m 17s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-24.04.2)
4m 36s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
15m 33s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
15m 46s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-24.04.2)
7m 50s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
20m 56s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-24.04.2)
2m 38s
Run tests (tests/salmon.nf.test docker NF-24.04.2)
10m 6s
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
14m 33s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-24.04.2)
5m 8s
Run tests (modules/nf-core/umicollapse/tests/main.nf.test docker NF-24.04.2)
6m 38s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
14m 38s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-24.04.2)
3m 39s
Run tests (tests/default.nf.test docker NF-latest-everything)
15m 44s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse/tests/main.nf.test docker NF-latest-everything)
3m 0s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
12m 45s
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
11m 14s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
13m 47s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything)
5m 38s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
15m 45s
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
15m 50s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything)
7m 13s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
19m 13s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-latest-everything)
4m 57s
Run tests (tests/salmon.nf.test docker NF-latest-everything)
8m 25s
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
15m 13s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything)
4m 53s
Run tests (modules/nf-core/umicollapse/tests/main.nf.test docker NF-latest-everything)
4m 1s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
14m 2s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything)
2m 46s
confirm-pass
1s
5h 58m 12s