From 43c55fe956af514c41b488f142fdf84c3a549715 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Wed, 11 Dec 2024 18:10:17 +0000 Subject: [PATCH] Exclude more variable logs --- tests/.nftignore | 2 ++ tests/umi.nf.test.snap | 21 ++++----------------- 2 files changed, 6 insertions(+), 17 deletions(-) diff --git a/tests/.nftignore b/tests/.nftignore index e96f0ec17..7f3fad699 100644 --- a/tests/.nftignore +++ b/tests/.nftignore @@ -83,6 +83,8 @@ umitools/*.umi_extract.log {salmon,star_rsem,star_salmon}/deseq2_qc/deseq2.sample.dists.txt {salmon,star_rsem,star_salmon}/deseq2_qc/size_factors/*.txt {salmon,star_rsem,star_salmon}/deseq2_qc/size_factors/deseq2.size_factors.RData +{salmon,star_rsem,star_salmon}/umitools/{genomic,transcriptomic}_dedup_log/* +{salmon,star_rsem,star_salmon}/umitools/prepare_for_salmon_log/* {salmon,star_salmon}/*/aux_info/fld.gz {salmon,star_salmon}/*/aux_info/meta_info.json {salmon,star_salmon}/*/libParams/flenDist.txt diff --git a/tests/umi.nf.test.snap b/tests/umi.nf.test.snap index a8a3a57d9..b12fa48d0 100644 --- a/tests/umi.nf.test.snap +++ b/tests/umi.nf.test.snap @@ -1467,27 +1467,14 @@ "WT_REP2.umi_dedup.sorted_per_umi_per_position.tsv:md5,6f5656947a7f0076df446e6f40430027", "WT_REP2.umi_dedup.transcriptome.sorted_edit_distance.tsv:md5,3e3c6a7e8996e566350742e9911366d3", "WT_REP2.umi_dedup.transcriptome.sorted_per_umi.tsv:md5,0c986c4cb7a77f650a19e2c454b9b179", - "WT_REP2.umi_dedup.transcriptome.sorted_per_umi_per_position.tsv:md5,af9028dbdab81de3854a32cd1d19ac8b", - "RAP1_IAA_30M_REP1.umi_dedup.sorted.log:md5,0001a4ebfeaedfa164311e075b4c6c8a", - "RAP1_UNINDUCED_REP1.umi_dedup.sorted.log:md5,150b19399146d766746e991cf2f20834", - "RAP1_UNINDUCED_REP2.umi_dedup.sorted.log:md5,218313d63828b1bd97bf0f379bad5e8f", - "WT_REP1.umi_dedup.sorted.log:md5,982c5089b199ca8647511f4b10e3a713", - "WT_REP2.umi_dedup.sorted.log:md5,3f2cc0f12cdc53db11a7f7409dde7d62", - "RAP1_IAA_30M_REP1.umi_dedup.transcriptome.filtered.prepare_for_rsem.log:md5,a7c8743ab54408ec184c669d42b53907", - "WT_REP1.umi_dedup.transcriptome.filtered.prepare_for_rsem.log:md5,5c334da8161e17825c08fc6a2522d187", - "WT_REP2.umi_dedup.transcriptome.filtered.prepare_for_rsem.log:md5,ddc19f73d0a622abc3bae9000a3daa4e", - "RAP1_IAA_30M_REP1.umi_dedup.transcriptome.sorted.log:md5,058d0796e29f1037460d936947cf2ba8", - "RAP1_UNINDUCED_REP1.umi_dedup.transcriptome.sorted.log:md5,5c93e408bbfd13061ad2f2b432747abe", - "RAP1_UNINDUCED_REP2.umi_dedup.transcriptome.sorted.log:md5,15bcb30ad07c9a71852ff38c40f9e79f", - "WT_REP1.umi_dedup.transcriptome.sorted.log:md5,8938cfbb06f7ec98635687b64151d098", - "WT_REP2.umi_dedup.transcriptome.sorted.log:md5,08cd52b814d3e2f4f4adc688643641c6" + "WT_REP2.umi_dedup.transcriptome.sorted_per_umi_per_position.tsv:md5,af9028dbdab81de3854a32cd1d19ac8b" ] ], "meta": { "nf-test": "0.9.0", "nextflow": "24.10.2" }, - "timestamp": "2024-12-11T17:23:58.835430691" + "timestamp": "2024-12-11T18:07:55.751564456" }, "Params: --aligner hisat2 --umi_dedup_tool 'umicollapse'": { "content": [ @@ -2708,7 +2695,7 @@ "nf-test": "0.9.0", "nextflow": "24.10.2" }, - "timestamp": "2024-12-11T17:17:19.399917398" + "timestamp": "2024-12-11T18:01:45.228731692" }, "--umi_dedup_tool 'umitools - stub": { "content": [ @@ -2820,6 +2807,6 @@ "nf-test": "0.9.0", "nextflow": "24.10.2" }, - "timestamp": "2024-12-11T17:36:56.031072985" + "timestamp": "2024-12-11T18:08:48.404716766" } } \ No newline at end of file