diff --git a/conf/modules.config b/conf/modules.config
index ed19c3d..5364ee5 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -12,8 +12,6 @@
 
 process {
 
-    
-
     publishDir = [
         path: { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" },
         mode: params.publish_dir_mode,
@@ -53,21 +51,11 @@ process {
         publishDir = [
             enabled: false
         ]
-	ext.args2 = 'ILLUMINACLIP:TruSeq3-PE.fa:2:30:10:2:True LEADING:3 TRAILING:3 MINLEN:36'
+	    ext.args2 = 'ILLUMINACLIP:TruSeq3-PE.fa:2:30:10:2:True LEADING:3 TRAILING:3 MINLEN:36'
     }
 
-
-    //
-    // Alignment options
-    //
-
-
-
-
-
-
     //
-    // Picard MarkDuplicates and Filtering options
+    // Alignment, Picard MarkDuplicates and Filtering options
     //
 
     withName: '.*BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES' {
@@ -110,12 +98,4 @@ process {
         ]
     }
 
-
-
-
-
-
-
-
-
 }