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Adding cellrangermulti subworkflow #805

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Adding cellrangermulti subworkflow

Adding cellrangermulti subworkflow #805

GitHub Actions / JUnit Test Report failed Feb 26, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in test-dataset_kallisto_aligner

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@github-actions github-actions / JUnit Test Report

test-dataset_kallisto_aligner 

Assertion failed: 

9 of 12 assertions failed
Raw output 
Nextflow stdout:

ERROR ~ Error executing process > 'NFCORE_SCRNASEQ:SCRNASEQ:MTX_CONVERSION:MTX_TO_SEURAT (Sample_X)'

Caused by:
  Process `NFCORE_SCRNASEQ:SCRNASEQ:MTX_CONVERSION:MTX_TO_SEURAT (Sample_X)` terminated with an error exit status (125)

Command executed:

  mtx_to_seurat.R \
      *count/counts_unfiltered/*.mtx \
      *count/counts_unfiltered/*.barcodes.txt \
      *count/counts_unfiltered/*.genes.txt \
      Sample_X/Sample_X_matrix.rds \
      kallisto

Command exit status:
  125

Command output:
  (empty)

Command error:
  Unable to find image 'quay.io/nf-core/seurat:4.3.0' locally
  docker: Error response from daemon: received unexpected HTTP status: 502 Bad Gateway.
  See 'docker run --help'.

Work dir:
  /home/runner/work/scrnaseq/scrnaseq/.nf-test/tests/1dd111b5584086509e90c61f7afc0265/work/e8/94a512e9357116f04e903b650f990f

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line

 -- Check '/home/runner/work/scrnaseq/scrnaseq/.nf-test/tests/1dd111b5584086509e90c61f7afc0265/meta/nextflow.log' file for details
Nextflow stderr:
View more details on GitHub Actions