wittyer bug

[kubranarci]

Description of the bug

Wittyer raises exceptions for specific kind of BND

• happens for Svaba and delly

relates to this: Illumina/witty.er#9

Command used and terminal output

from svaba:
System.IO.InvalidDataException: Found a symbolic SV have no END or SVLEN key in info field, cannot process the variant 
  7     152075573       4168826:2       A       A[21:11079623[  0       PASS    MATEID=4168826:1;NM=-1;SPAN=-1;MATENM=-1;IMPRECISE;DISC_MAPQ=55;AN=2;MAPQ=55;AC=0;EVDNC=DSCRD;SVTYPE=BND;NUMPARTS=0;SCTG=7:152075573(+)-21:11079623(-)__21_11074001_11099001D   GT:AD:DP:GQ:PL:SR:DR:LR:LO
ex

from delly:
System.ArgumentException: Invalid interval given: Start(142535829) and Stop(10086436)

Relevant files

No response

System information

No response

[kubranarci]

sam error for lumpy as well:

Found a symbolic SV have no END or SVLEN key in info field, cannot process the variant