diff --git a/src/content/docs/core-concepts/arc.mdx b/src/content/docs/core-concepts/arc.mdx index 2934fca1a..d6b9d58bb 100644 --- a/src/content/docs/core-concepts/arc.mdx +++ b/src/content/docs/core-concepts/arc.mdx @@ -3,6 +3,8 @@ title: ARC lastUpdated: 2023-05-25 authors: - martin-kuhl +sidebar: + order: 1 --- # Annotated Research Context (ARC) diff --git a/src/content/docs/guides/best-practices-for-data-annotation.md b/src/content/docs/core-concepts/best-practices-for-data-annotation.md similarity index 99% rename from src/content/docs/guides/best-practices-for-data-annotation.md rename to src/content/docs/core-concepts/best-practices-for-data-annotation.md index 3ea106ab2..d395478c5 100644 --- a/src/content/docs/guides/best-practices-for-data-annotation.md +++ b/src/content/docs/core-concepts/best-practices-for-data-annotation.md @@ -3,6 +3,8 @@ title: Best Practices For Data Annotation lastUpdated: 2022-11-07 authors: - martin-kuhl +sidebar: + order: 3 --- diff --git a/src/content/docs/guides/arc-practical-entry.mdx b/src/content/docs/core-concepts/is-my-arc-good-enough.mdx similarity index 99% rename from src/content/docs/guides/arc-practical-entry.mdx rename to src/content/docs/core-concepts/is-my-arc-good-enough.mdx index 2e6496ed0..ff782038a 100644 --- a/src/content/docs/guides/arc-practical-entry.mdx +++ b/src/content/docs/core-concepts/is-my-arc-good-enough.mdx @@ -1,5 +1,5 @@ --- -title: Creating an ARC for Your Project +title: Is My ARC Good Enough? lastUpdated: 2024-11-13 authors: - dominik-brilhaus diff --git a/src/content/docs/core-concepts/isa.md b/src/content/docs/core-concepts/isa.md index f35d2e8fb..f7ace77c6 100644 --- a/src/content/docs/core-concepts/isa.md +++ b/src/content/docs/core-concepts/isa.md @@ -4,6 +4,8 @@ authors: - dominik-brilhaus - martin-kuhl lastUpdated: 2024-11-06 +sidebar: + order: 6 --- The ARC builds on the ISA model (Investigation - Study - Assay) for metadata annotation, which aligns well with most projects in biology labs. It allows to group multiple studies and assays to one investigation. diff --git a/src/content/docs/guides/arc-enabling-platforms.md b/src/content/docs/core-concepts/optimizing-arc-integration.md similarity index 99% rename from src/content/docs/guides/arc-enabling-platforms.md rename to src/content/docs/core-concepts/optimizing-arc-integration.md index 8633c6cda..2e6a68f8f 100644 --- a/src/content/docs/guides/arc-enabling-platforms.md +++ b/src/content/docs/core-concepts/optimizing-arc-integration.md @@ -1,8 +1,10 @@ --- -title: ARCs in Enabling Platforms +title: Optimizing ARC Integration lastUpdated: 2023-08-04 authors: - dominik-brilhaus +sidebar: + order: 4 --- Here we explore how the ARC can help streamline data flows and project management in enabling platforms. diff --git a/src/content/docs/cwl/index.mdx b/src/content/docs/cwl/index.mdx index 73877e7d1..1783e5b06 100644 --- a/src/content/docs/cwl/index.mdx +++ b/src/content/docs/cwl/index.mdx @@ -36,4 +36,9 @@ Please explore the sections on the left to find guides on href="/nfdi4plants.knowledgebase/cwl/cwl-examples" description="Find some example files!" /> + \ No newline at end of file diff --git a/src/content/docs/guides/arc-cwl-wrap-script.mdx b/src/content/docs/cwl/step-by-step.mdx similarity index 99% rename from src/content/docs/guides/arc-cwl-wrap-script.mdx rename to src/content/docs/cwl/step-by-step.mdx index ede58e51e..5c6a6911a 100644 --- a/src/content/docs/guides/arc-cwl-wrap-script.mdx +++ b/src/content/docs/cwl/step-by-step.mdx @@ -1,5 +1,5 @@ --- -title: Wrapping a script with CWL +title: Step by Step lastUpdated: 2024-11-14 authors: - dominik-brilhaus diff --git a/src/content/docs/guides/annotate-in-excel.mdx b/src/content/docs/guides/annotate-in-excel.mdx index e9ee593f6..6f0988409 100644 --- a/src/content/docs/guides/annotate-in-excel.mdx +++ b/src/content/docs/guides/annotate-in-excel.mdx @@ -7,7 +7,7 @@ sidebar: order: 1 badge: text: new - variant: caution + variant: tip --- import { Steps } from '@astrojs/starlight/components'; diff --git a/src/content/docs/guides/publish-arc.mdx b/src/content/docs/guides/publish-arc.mdx index 2fa6d0508..22889e3d6 100644 --- a/src/content/docs/guides/publish-arc.mdx +++ b/src/content/docs/guides/publish-arc.mdx @@ -14,10 +14,18 @@ import ViolaSays from '@components/ViolaSays.astro' import { Steps } from '@astrojs/starlight/components'; import { Card } from '@astrojs/starlight/components'; + +Find out more about ARC data publications [here](/nfdi4plants.knowledgebase/datahub/data-publications)! + +## Prequisites + +Before you can publish your ARC to DataPLANT's publication service (based on Invenio), it needs to be validated. + :::note -Before you can publish your ARC to DataPLANT's publication service (based on Invenio), it needs to be validated. Follow [this guide](/nfdi4plants.knowledgebase/guides/validate-arc) to validate your ARC for Invenio. +Follow [this guide](/nfdi4plants.knowledgebase/guides/validate-arc) to validate your ARC for Invenio. ::: +# PLANTDataHUB @@ -40,7 +48,3 @@ Before you can publish your ARC to DataPLANT's publication service (based on Inv - -:::tip -Find out more about ARC data publications [here](/nfdi4plants.knowledgebase/datahub/data-publications) -:::