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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Fuse & Conform - - - All T1w images are aligned and - averaged to form a 3D reference - image - - - - - - Skull-stripping - - - Atlas-based brain extraction - of the reference T1w image - - - - - - - - - - - - - - - - - - - - - T1-weighted - - - One or more T1w - images - - - T2-weighted - - - (Optional) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - time - - - TR - - - BOLD run - - - Time-series of blood-oxygen - level (BOLD) measurements - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Generate reference & brain mask - - - Specialized averaging of the time-series into one - volume and separate brain from background - - - Estimation of head-motion - - - Calculate rigid-body motion parameters that - minimize motion between time-steps - - - Slice-timing correction - - - (Optional) Infer the signal that would have been - measured if all slices were acquired simultaneously - - - Template - - - Average of - 152 subjects, - MNI space - - - INU Correction - - - Estimate and correct for - intensity nonuniformity (INU) - - - Spatial - normalization - - - Non-linear, spatial - alignment to the - brain template - - - Brain tissue - segmentation - - - Voxel-wise - classification on - tissues - - - Surface - reconstruction - - - Inner and outer - surfaces of the cortical - sheet are identified - - - - - - - - - - - - - - + id="g9279-8" + style="stroke-linecap:butt;stroke-linejoin:round" + transform="matrix(0.07961635,0,0,0.07961635,34.354098,89.506481)"> + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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