Skip to content

Commit

Permalink
enh: minor updates
Browse files Browse the repository at this point in the history
  • Loading branch information
oesteban committed Sep 9, 2024
1 parent 8b8badc commit 2f52231
Show file tree
Hide file tree
Showing 2 changed files with 7 additions and 5 deletions.
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
<!DOCTYPE html>
<html>
<head>
<title>fMRIPrep Bootcamp | Day 1 :: Containers</title>
<title>fMRIPrep Bootcamp | Day 1 :: Apptainer in UNIGE's HPC</title>
<meta charset="utf-8">
<link rel="stylesheet" type="text/css" href="/assets/asciinema-player/asciinema-player.css" />
<style>
Expand Down Expand Up @@ -522,10 +522,12 @@
### 3 | MRIQC's specific arguments

We only run T1w images (`-m T1w`), we make it more verbose `-vv`,
we name the dataset (`--dsname bootcamp`) and we allow the workflow
to run up to 16 processes with up to 8 cores each `--nprocs 16 --omp-nthreads 8`:
we name the dataset (`--dsname bootcamp`), we allow the workflow
to run up to 16 processes with up to 8 cores each `--nprocs 16 --omp-nthreads 8`,
and preserve the intermediate files at `$HOME/scratch/work`:
``` Bash
-m T1w -vv --dsname bootcamp --nprocs 16 --omp-nthreads 8
-m T1w -vv --dsname bootcamp --nprocs 16 --omp-nthreads 8 \
-w $HOME/scratch/work
```

</textarea>
Expand Down
2 changes: 1 addition & 1 deletion docs/assets/fmriprep-bootcamp-geneva2024/home/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -607,7 +607,7 @@
| 14h00 | Introduction to UNIGE's HPC and running jobs |
| 14h45 | [Making data available on HPC (hands-on)](/assets/fmriprep-bootcamp-geneva2024/day1-05-data-and-hpc) |
| 15h15 | Coffee break |
| 15h30 | [Hands-on: Apptainer within HPC Unige](/assets/fmriprep-bootcamp-geneva2024/day1-06-apptainer) |
| 15h30 | [Hands-on: Apptainer in UNIGE's HPC](/assets/fmriprep-bootcamp-geneva2024/day1-06-apptainer) |
| 16h00 | Hands-on: run fMRIPrep on the dataset |
| 17h00 | End |
| 19h00 | Welcome dinner |
Expand Down

0 comments on commit 2f52231

Please sign in to comment.