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Merge pull request #75 from nmfs-opensci/eeholmes-patch-1
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eeholmes authored Oct 22, 2024
2 parents be73c6e + 135e0dd commit b64ff79
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69 changes: 32 additions & 37 deletions environment.yml
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Expand Up @@ -6,53 +6,48 @@ channels:

dependencies:
- python~=3.11.0
# nbgitpuller is very helpful when distributing user content
- nbgitpuller~=1.2.0
# Specify major version of jupyterlab to use. Manually bump it when you want to upgrade
# jupyterlab version
- jupyterlab>=4.0,<4.1
# This provides memory usage stats on JupyterLab and classic notebook
- jupyter-resource-usage~=1.0.1
# https://syncthing.net/ provides a dropbox-like interface for syncing directories across users,
# hubs and machines. Used along with `jupyter-syncthing-proxy`.
- jupyter-syncthing-proxy==1.0.3
- syncthing~=1.22.1
- jupyterlab>=4.0
- jupyter-resource-usage
- jupyterlab-git
# gh-scoped-creds allows users to securely push to GitHub from their repo.
# https://blog.jupyter.org/securely-pushing-to-github-from-a-jupyterhub-3ee42dfdc54f has
# some more information
- gh-scoped-creds==4.1
# More git tools from github-cli
- gh~=2.32.1

# R/RStudio Support
- jupyter-rsession-proxy

# VS Code support
- jupyter-vscode-proxy~=0.5
- code-server~=4.23
- jupyter-vscode-proxy
- code-server

# Jupyter tools
- ipython~=8.17
- ipywidgets~=8.1.1
- jupyter-ai~=2.20
- jupyter-book~=1.0.0
# - jupyter-collaboration~=2.0.1
- jupyter-offlinenotebook~=0.3.1
- jupyter-sshd-proxy~=0.2
- jupyterlab-favorites~=3.2.1
- jupyterlab-geojson~=3.4.0
- jupyterlab-git~=0.50.0
- jupyterlab-h5web~=11.1.0
- jupyterlab-myst~=2.4.2
- jupyterlab_pygments~=0.3.0 # To bring extension up-to-date
- jupytext~=1.16.1
- nbdime~=4.0.1
# https://syncthing.net/ provides a dropbox-like interface for syncing directories across users,
# hubs and machines. Used along with `jupyter-syncthing-proxy`.
#- jupyter-syncthing-proxy==1.0.3
#- syncthing~=1.22.1

# Extra Jupyter tools
- ipython
- ipywidgets
- jupyter-ai
- jupyter-book
- jupyter-offlinenotebook
- jupyter-sshd-proxy
- jupyterlab-favorites
- jupyterlab-geojson
- jupyterlab-h5web
- jupyterlab-myst
- jupyterlab_pygments>=0.3.0
- jupytext
- nbdime
# JupyterBook Addons
- sphinx~=7.3
- sphinx
- sphinxcontrib-bibtex
# Interactive apps
- itables~=2.1
- voila~=0.5
- itables
- voila
# nbgitpuller is very helpful when distributing user content
- nbgitpuller
# More git tools from github-cli
- gh

# Resolves warning "No ICDs were found": https://github.com/CryoInTheCloud/hub-image/issues/50
- ocl-icd-system
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# Desktop server
# Not all packages will be available from conda-forge, we install from pip when we need to.
- pip~=23.3.2
- pip
- pip:
# Access linux desktop from inside JupyterHub
- jupyter-desktop-server==0.1.3

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