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ci: More wheel hell #44

ci: More wheel hell

ci: More wheel hell #44

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: CI
on:
push:
branches: [ master ]
pull_request:
branches: [ master ]
jobs:
build:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
steps:
- name: Install system build dependencies
run: |
sudo apt-get update
sudo apt-get install -y build-essential make zlib1g-dev libssl-dev libpng-dev
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Build UCSC kent library
run: |
make build-ucsc
- name: Install Python dependencies
run: |
python -m pip install --upgrade pip
python -m pip install pytest
python -m pip install cython numpy pandas
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Build and install package
run: |
DISTUTILS_DEBUG=1 python -m pip install -v -e .
ldd -r bbi/cbbi*.so
- name: Test with pytest
run: |
pytest -v