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DISCLAIMER - I got this working before i used this sequelize-binary-uuid plugin. But I did get that Data too long error and this worked for me. I'm now trying this plugin and will let you know if I have problems.
When I do the alter (i'm using DBeaver), I had to do a binary with a length which DBeaver wouldn't let me do out of the box:
ALTERTABLE tablename MODIFY COLUMN id binary(36) NOT NULL;
UnhandledPromiseRejectionWarning: SequelizeDatabaseError: Data too long for column 'id' at row 1
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