Merge pull request #339 from arayabrain/feature/add-eval-params

add component eval params for cnmfe
oist · Apr 15, 2024 · 82c7a08 · 82c7a08
2 parents ad92fbc + a1513a3
commit 82c7a08
Showing 1 changed file with 12 additions and 0 deletions.
diff --git a/studio/app/optinist/wrappers/caiman/params/caiman_cnmfe.yaml b/studio/app/optinist/wrappers/caiman/params/caiman_cnmfe.yaml
@@ -110,3 +110,15 @@ advanced:
     do_merge: True
     merge_parallel: False
     max_merge_area: null
+
+  quality_evaluation_params:
+    SNR_lowest: 0.5
+    cnn_lowest: 0.1
+    gSig_range: null
+    min_SNR: 2.5
+    min_cnn_thr: 0.9
+    rval_lowest: -1
+    rval_thr: 0.8
+    use_cnn: True
+    use_ecc: False
+    max_ecc: 3