CHANGELOG.md

Unreleased

• Drop support for Python 3.8.

0.9.0 (May 2024)

• Correctly specify maximum compatible fsspec version. (#338)
• Add tests on Python 3.12. (#338)
• Write OMERO metadata. (#261)
• Fixed chunking when a scalar value for chunks is given. Previously passing storage_options={"chunks": <int>} only set the chunk size of the final dimension. Now the chunk size of all dimensions is set to this value, which is identical behaviour to zarr-python. (#365)

0.8.3 (November 2023)

• Fix reading HCS file on AWS S3 (#322)
• Update docs to include write example for HCS dataset (#317)
• Minor improvements to format docs (#316)
• Add dask to intersphinx mapping (#315)

0.8.2 (September 2023)

• Fix compute on plate grid (#299)
• Check Well exists before trying to load data (#296)
• Avoid hard-coded field-of-view path "0". Thanks to aeisenbarth (#300)
• Update python.rst to have min, max for window. Thanks to Sean Martin (#309)
• Exclude fsspec 2023.9.0 fixes FileNotFoundError (#307)
• Set minimum fsspec version. Thanks to Evan Lyall (#295)
• Add conda install instructions to README. Thanks to David Stansby (#313)
• Cody tidy fixes. Thanks to Dimitri Papadopoulos Orfanos (#310, #312)

0.8.0 (June 2023)

• Add ome_zarr view image.zarr to server and view in browser (#285)
• Allow main with empty args: thanks to Dominik Kutra (#279)

0.7.0 (May 2023)

• Optimize zarr multiscale writing by permitting delayed execution: thanks to Camilo Laiton (#257)
• Use default compressor by default; thanks to Juan Nunez-Iglesias (#253)
• Fix bug in dask resizing of edge chunks (#244)
• Fix dimension separator used in dask array to_zarr; thanks to Luca Marconato (#243)
• Add compute option to image writing methods; thanks to Camilo Laiton (#257)
• Allow errors to be raised when reading Multiscales data (#266)
• Add a pre-commit configuration for codespell; thanks to Yaroslav Halchenko (#272)

0.6.1 (October 2022)

• Fix pyramid dtype for scaler.local_mean (#233)

0.6.0 (September 2022)

• Add support for writing dask arrays. Thanks to Daniel Toloudis, with code contributions from Andreas Eisenbarth (#192)
• Fix a bug in using storage_options with write_images, thanks to Marc Claesen (#221)
• Use multiscales name for node metadata (#214)

0.5.2 (July 2022)

• Disable auto_mkdir when path begins with s3, thanks to @colobas (#212)

0.5.1 (June 2022)

• Read multi-resolution pyramids in ome_zarr.reader.Well, thanks to @tcompa (#209)

0.5.0 (June 2022)

• Add fmt option to write_label_metadata and store version (#206)

0.4.2 (May 2022)

• Relax version detection (#189)
• Fix format warning duplication (#190)
• Fix plate pyramid loading (#195)

0.4.1 (Mar 2022)

• Unify docstrings in ome_zarr.writer module (#185)

0.4.0 (Mar 2022)

• Add API for writing data according to the image-label spec: write_labels, write_multiscale_labels & write_label_metadata (#178, #184)
• Remove byte_order from write_image signature (#184)
• Deprecate chunks argument in favor of storage_options (#184)

0.3.0 (Feb 2022)

Specification changes

• Add support for OME-NGFF 0.4 specification (#124, #159, #162)

API additions

• Add support for passing storage options (compression, chunks..) to the writer API, thanks to @satra (#161)
• Add API for writing plate & well metadata (#153, #157)
• Add API for writing multiscales metadata (#149, #165)

Bug fix

• Fix remaining HCS assumptions that images are 5D (#148)
• Cap aiohttp to version 3.x (#127)

0.2.0 (Oct 2021)

Breaking changes

• Add support for writing and scaling 2D, 3D and 4D data (#114)

Infrastructure changes

• Add dispatch GitHub workflow (#118)

0.1.1 (Sep 2021)

Bug fix

• Fix loading of HCS data with missing wells (#111)
• Point to new Embassy object store (#109)

0.1.0 (Sep 2021)