From e4945f75ae6b15b1d0449bca455051c09bdcf933 Mon Sep 17 00:00:00 2001 From: Nezar Abdennur Date: Fri, 25 Sep 2020 16:00:25 -0400 Subject: [PATCH 1/2] Update dependencies --- .travis.yml | 1 + requirements-dev.txt | 9 +++++++-- requirements.txt | 2 +- 3 files changed, 9 insertions(+), 3 deletions(-) diff --git a/.travis.yml b/.travis.yml index f1cfff76..27ab68b8 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,6 +1,7 @@ language: python python: # We don't actually use the Travis Python, but this keeps it organized. + - "2.7" - "3.6" - "3.7" - "3.8" diff --git a/requirements-dev.txt b/requirements-dev.txt index a53c0044..9dfc3c16 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -1,6 +1,11 @@ -r requirements.txt +biopython<1.77 dask[array,dataframe] -pytest +ipytree +matplotlib mock +psutil +pysam +pytest pytest-flake8 -pytest-cov \ No newline at end of file +pytest-cov diff --git a/requirements.txt b/requirements.txt index ddb21e89..e43364fb 100644 --- a/requirements.txt +++ b/requirements.txt @@ -4,7 +4,7 @@ scipy>=0.16 pandas h5py>=2.5 click>=7 -cytoolz +cytoolz<0.11 multiprocess pyfaidx pypairix From 87a17aceac33440e1eb3e73c9697d68a255dce62 Mon Sep 17 00:00:00 2001 From: Nezar Abdennur Date: Fri, 25 Sep 2020 16:36:01 -0400 Subject: [PATCH 2/2] Patch bump --- CHANGES.md | 7 ++++++- cooler/_version.py | 2 +- 2 files changed, 7 insertions(+), 2 deletions(-) diff --git a/CHANGES.md b/CHANGES.md index 78ead5a9..f99327c1 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -1,6 +1,11 @@ # Release notes # -## Upcoming release... +## [v0.8.10](https://github.com/mirnylab/cooler/compare/v0.8.9...v0.8.10) + +Date : 2020-09-25 + +### Bug fixes +* Fixed the new header parsing in `cooler cload pairs` to handle esoteric file stream implementations. Specifically `GzipFile` had stopped working. By @golobor ## [v0.8.9](https://github.com/mirnylab/cooler/compare/v0.8.8...v0.8.9) diff --git a/cooler/_version.py b/cooler/_version.py index d718d4c3..c306e3db 100644 --- a/cooler/_version.py +++ b/cooler/_version.py @@ -1,4 +1,4 @@ -__version__ = "0.8.9" +__version__ = "0.8.10" __format_version__ = 3 __format_version_mcool__ = 2 __format_version_scool__ = 1