_viash.yaml

name: openproblems
version: dev
organization: openproblems-bio
viash_version: 0.9.0

description: |
  Open Problems is a living, extensible, community-guided benchmarking platform.
license: MIT
keywords: [openproblems, benchmarking, single-cell omics]

references:
  doi:
    # Malte Luecken, Scott Gigante, Daniel Burkhardt, Robrecht Cannoodt, et al.
    # Defining and benchmarking open problems in single-cell analysis, 
    # 03 April 2024, PREPRINT (Version 1) available at Research Square [https://doi.org/10.21203/rs.3.rs-4181617/v1]
    - 10.21203/rs.3.rs-4181617/v1

links:
  issue_tracker: https://github.com/openproblems-bio/openproblems/issues
  repository: https://github.com/openproblems-bio/openproblems
  docker_registry: ghcr.io

config_mods: |
  .runners[.type == "nextflow"].config.labels := { lowmem : "memory = 20.Gb", midmem : "memory = 50.Gb", highmem : "memory = 100.Gb", lowcpu : "cpus = 5", midcpu : "cpus = 15", highcpu : "cpus = 30", lowtime : "time = 1.h", midtime : "time = 4.h", hightime : "time = 8.h", veryhightime : "time = 24.h" }
  .runners[.type == "nextflow"].config.script := "process.errorStrategy = 'ignore'"


info:
  test_resources:
    - type: s3
      path: s3://openproblems-data/resources_test/common
      dest: resources_test/common
    - type: s3
      path: s3://openproblems-data/resources_test/openproblems
      dest: resources_test/openproblems