diff --git a/notebooks/eda.ipynb b/notebooks/eda.ipynb index e69de29bb..17c09e0ca 100644 --- a/notebooks/eda.ipynb +++ b/notebooks/eda.ipynb @@ -0,0 +1,44 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [], + "source": [ + "import anndata as ad \n", + "bulk_adata = ad.read_h5ad('../resources/raw-data/perturbation_data.h5ad')" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "bulk_adata" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "py10", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.14" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/src/control_methods/positive_control/config.vsh.yaml b/src/control_methods/positive_control/config.novsh.yaml similarity index 100% rename from src/control_methods/positive_control/config.vsh.yaml rename to src/control_methods/positive_control/config.novsh.yaml diff --git a/src/methods/figr/config.vsh.yaml b/src/methods/figr/config.novsh.yaml similarity index 100% rename from src/methods/figr/config.vsh.yaml rename to src/methods/figr/config.novsh.yaml diff --git a/src/methods/scglue/config.novsh.yaml b/src/methods/scglue/config.vsh.yaml similarity index 100% rename from src/methods/scglue/config.novsh.yaml rename to src/methods/scglue/config.vsh.yaml