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    210 repositories

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformaticsdatabasecomparative-genomicsperlensembl
      Perl
      •
      Apache License 2.0
      •69•51•0•4•Updated Nov 29, 2024Nov 29, 2024

    • ensembl-biomart

      Public
      Code to build the ensembl and ensembl genomes marts
      Perl
      •8•3•0•1•Updated Nov 29, 2024Nov 29, 2024

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •46•9•0•3•Updated Nov 28, 2024Nov 28, 2024

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •42•11•0•8•Updated Nov 28, 2024Nov 28, 2024

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •1•1•0•0•Updated Nov 28, 2024Nov 28, 2024

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•1•0•2•Updated Nov 28, 2024Nov 28, 2024

    • ensembl-production-imported

      Public
      Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)
      Perl
      •
      Apache License 2.0
      •4•0•0•1•Updated Nov 28, 2024Nov 28, 2024

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •0•2•0•5•Updated Nov 27, 2024Nov 27, 2024

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •117•142•7•4•Updated Nov 27, 2024Nov 27, 2024

    • ensembl-web-tools-api

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Nov 27, 2024Nov 27, 2024

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •3•4•0•2•Updated Nov 27, 2024Nov 27, 2024

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•13•0•1•Updated Nov 26, 2024Nov 26, 2024

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •152•456•55•11•Updated Nov 25, 2024Nov 25, 2024

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •55•27•0•8•Updated Nov 25, 2024Nov 25, 2024

    • ensembl-variation-pipelines

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•2•Updated Nov 20, 2024Nov 20, 2024

    • tark

      Public
      HTML
      •
      Apache License 2.0
      •3•4•4•2•Updated Nov 20, 2024Nov 20, 2024

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •7•9•0•1•Updated Nov 20, 2024Nov 20, 2024

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •3•1•0•2•Updated Nov 19, 2024Nov 19, 2024

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •28•5•0•1•Updated Nov 19, 2024Nov 19, 2024

    • ensembl-dauphin-style-compiler

      Public
      "dauphin" style-compiler for genome browser
      Rust
      •0•0•9•2•Updated Nov 18, 2024Nov 18, 2024

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •51•22•0•1•Updated Nov 18, 2024Nov 18, 2024

    • ensembl-hypsipyle

      Public
      Ensembl Variation GraphQL server
      Python
      •
      Apache License 2.0
      •2•0•5•1•Updated Nov 18, 2024Nov 18, 2024

    • ensembl-refget

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • plant-scripts

      Public
      Scripting analyses of genomes in Ensembl Plants
      Perl
      •
      Apache License 2.0
      •8•38•1•0•Updated Nov 15, 2024Nov 15, 2024

    • ensembl-io

      Public
      File parsing and writing code for Ensembl
      Perl
      •
      Apache License 2.0
      •18•10•0•1•Updated Nov 15, 2024Nov 15, 2024

    • ensembl-web-track-api

      Public
      A Django app for serving the available annotation tracks for Ensembl client.
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •35•17•0•0•Updated Nov 14, 2024Nov 14, 2024

    • ensembl-web-metadata-api

      Public
      Metadata API for beta.ensembl.org
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • WiggleTools

      Public
      Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
      C
      •
      Apache License 2.0
      •25•144•3•0•Updated Nov 6, 2024Nov 6, 2024

    • ensembl-utils

      Public
      Ensembl python utils
      Python
      •
      Apache License 2.0
      •3•3•0•0•Updated Nov 6, 2024Nov 6, 2024