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    589 repositories

    • gig-map

      Public
      Build a map of genes present across a set of microbial genomes
      Python
      •4•13•0•0•Updated Dec 13, 2024Dec 13, 2024

    • workflows-cirro

      Public
      Collection of workflow configurations for execution via Cirro
      MIT License
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • target-data-viz

      Public
      Shiny app for visualizing TARGET pediatric AML data
      HTML
      •2•2•8•0•Updated Dec 11, 2024Dec 11, 2024

    • pgmap

      Public
      R
      •1•0•3•2•Updated Dec 11, 2024Dec 11, 2024

    • seatrac-hackday-2024

      Public
      Contains info and code examples for the SEATRAC TB Hackday 2024
      HTML
      •8•1•0•1•Updated Dec 11, 2024Dec 11, 2024

    • itn-dashboard

      Public
      ITN Dashboard for data generated from metricminer
      dasl
      R
      •0•0•5•1•Updated Dec 11, 2024Dec 11, 2024

    • VISCtemplates

      Public
      Tools for writing reproducible reports at VISC
      visc
      R
      •
      Other
      •2•6•38•5•Updated Dec 10, 2024Dec 10, 2024

    • ocdo

      Public
      Home of the OCDO public website
      SCSS
      •0•0•4•1•Updated Dec 9, 2024Dec 9, 2024

    • shiny-cromwell

      Public
      Shiny app for interacting with the Fred Hutch instances of Cromwell. Contact Taylor Firman.
      dasl
      R
      •
      MIT License
      •3•3•45•1•Updated Dec 9, 2024Dec 9, 2024

    • easybuild-life-sciences

      Public
      Howto and implementation documentation
      easybuildlifesciencescientific-softwareeasyconfig
      C++
      •6•22•7•0•Updated Dec 7, 2024Dec 7, 2024

    • GDSCNsoilsites

      Public
      Homepage for BioDIGS Project. Learn about the project and download data.
      datametagenomicsstudent-researchbiodigs
      R
      •
      MIT License
      •0•1•10•0•Updated Dec 7, 2024Dec 7, 2024

    • wiki

      Public
      SciWiki: Collective KnowledgeBase for Scientific Data and Use
      data-sciencebioinformaticswikicomputingsciwikifhdaslcommunitydocumentationopen-science
      HTML
      •
      Other
      •46•38•59•5•Updated Dec 6, 2024Dec 6, 2024

    • Monopogen

      Public
      SNV calling from single cell sequencing
      HTML
      •
      GNU General Public License v3.0
      •19•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • gimap

      Public
      Genetic Interaction MAPping for dual target CRISPR screens
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•21•3•Updated Dec 5, 2024Dec 5, 2024

    • eipm-calculator

      Public
      R
      •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • GI_mapping

      Public
      R
      •3•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • pg-dashboard

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • EBcb

      Public
      EasyBuild container build - A docker container for building software with EasyBuild
      Shell
      •1•7•0•0•Updated Nov 22, 2024Nov 22, 2024

    • nf-cellranger-tools

      Public
      Collection of Nextflow tools for using CellRanger
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • scicomp-leftover

      Public
      Remove processes without Slurm Job
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 20, 2024Nov 20, 2024

    • tfcb_2024

      Public
      Course website for MCB 536 Tools for Computational Biology Fall 2024
      Jupyter Notebook
      •19•2•0•2•Updated Nov 19, 2024Nov 19, 2024

    • r-shiny-base

      Public
      Base Docker container for R Shiny apps
      R
      •
      Apache License 2.0
      •9•6•1•0•Updated Nov 13, 2024Nov 13, 2024

    • nf-virscan-qc

      Public
      Nextflow workflow for performing quality control analysis of VirScan datasets
      Nextflow
      •0•1•0•0•Updated Nov 8, 2024Nov 8, 2024

    • docker-proSCessoR

      Public
      Docker image with libraries needed to run proSCessoR
      Dockerfile
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • ww-vc-trio_sanaz

      Public
      Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Nov 7, 2024Nov 7, 2024

    • aws-batch-wrapper

      Public
      Simplify interaction with AWS Batch at Fred Hutch
      Python
      •0•1•1•6•Updated Nov 7, 2024Nov 7, 2024

    • SANI

      Public
      Suspended Animation Neuron Identifier
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • Wellington-et-al-2024

      Public
      This is the code used for data analysis in the Wellington et al. 2024 paper.
      R
      •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

    • pca-salvage-therapy-predictimands

      Public
      Code supporting "Predictimands for Salvage Therapy in Biochemically Recurrent Prostate Cancer Using Joint Longitudinal and Failure Time Models"
      0•0•0•0•Updated Oct 27, 2024Oct 27, 2024

    • rna-qc-tool

      Public
      A Shiny app for interactive visualization of RNA quality control statistics
      R
      •0•1•0•0•Updated Oct 22, 2024Oct 22, 2024