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@igemsoftware2020 iGEM Software 2020

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    43 repositories

    • Concordia_Montreal

      Public
      Determine yeast genes regulation in micro-gravity
      JavaScript
      •
      Other
      •2•1•0•5•Updated Dec 11, 2022Dec 11, 2022

    • IISER-Pune-India

      Public
      Design and development of Peptide drugs against falciparum Malaria and a Deep learning Web App for Malaria Diagnosis
      molecular-dynamics-simulationtherapeuticsdeep-learningmalaria
      Jupyter Notebook
      •
      MIT License
      •6•5•0•8•Updated Dec 8, 2022Dec 8, 2022

    • Team_UESTC_Software

      Public
      ASP.NET
      •0•0•0•0•Updated Mar 26, 2022Mar 26, 2022

    • Agro-Q

      Public
      Agro-Q is a mobile app used to monitor a hydroponics system wirelessly
      appmobilehydroponicsiot-application
      JavaScript
      •
      MIT License
      •0•2•0•1•Updated Dec 27, 2021Dec 27, 2021

    • Rochester

      Public
      Codes for Rochester iGEM team modeling and software
      Jupyter Notebook
      •0•0•0•1•Updated Oct 3, 2021Oct 3, 2021

    • Hannover

      Public
      This repository contains the code for simulating the growth of a Biofilm after attachment using Molecular dynamics simulation methods. The project was build as part of the iGEM 2020 Contest. The BiofilmSimulation software can be installed as A python package, documented under https://pypi.org/project/BiofilmSimulation.
      software-toolsmolecular-dynamics-simulationigem-competitionbiofilm-growth
      Jupyter Notebook
      •
      MIT License
      •4•11•4•0•Updated May 21, 2021May 21, 2021

    • Lambert_GA

      Public
      iGEM AgroSENSE Mobile App
      Objective-C
      •0•0•0•0•Updated Jan 6, 2021Jan 6, 2021

    • Team_Waseda

      Public
      Team Waseda iGEM 2020
      0•0•0•0•Updated Dec 10, 2020Dec 10, 2020

    • Chalmers-Gothenburg

      Public
      HTML
      •2•1•0•0•Updated Dec 8, 2020Dec 8, 2020

    • CrispyFinder

      Public
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Nov 15, 2020Nov 15, 2020

    • SYSU-Software

      Public
      C++
      •1•2•0•0•Updated Nov 15, 2020Nov 15, 2020

    • iGem2020Uppsala

      Public
      Where we share and collaborate on the code for the iGem 2020 competion
      synthetic-biologymolecular-dynamicscellular-network
      Jupyter Notebook
      •1•6•17•0•Updated Nov 9, 2020Nov 9, 2020

    • Baltimore_BioCrew

      Public
      github repo for Baltimore Biocrew 2020 software
      HTML
      •3•0•0•0•Updated Nov 8, 2020Nov 8, 2020

    • UiOslo-Norway

      Public
      Julia
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 3, 2020Nov 3, 2020

    • Imperial_College

      Public
      Automated DNA assembly script generation pipeline for Imperial College iGEM Team 2020 (Software Track).
      1•0•0•0•Updated Oct 28, 2020Oct 28, 2020

    • IIT_Roorkee_India

      Public
      Machine Learning model for detecting Antibiotic Resistance genes and Django based REST API for predicting secondary structure of our novel engineered protein.
      JavaScript
      •
      MIT License
      •2•4•0•0•Updated Oct 28, 2020Oct 28, 2020

    • iGEM-Moscow-Kinetic-Model

      Public
      Kinetic model of the detection system with CasX
      0•0•0•0•Updated Oct 28, 2020Oct 28, 2020

    • Synthesis_Navigator

      Public
      A small synthetic biology tool in development.
      CSS
      •
      GNU General Public License v3.0
      •1•7•0•0•Updated Oct 28, 2020Oct 28, 2020

    • Ionis_Paris

      Public
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 28, 2020Oct 28, 2020

    • UNSW_Australia

      Public
      Web tool for checking if your wiki has the required urls for the medals and awards you intend to contest.
      JavaScript
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 28, 2020Oct 28, 2020

    • optizyme

      Public
      Optizyme is a software package in R that streamlines the computational modeling and optimization of cell-free biological systems.
      R
      •0•0•0•1•Updated Oct 28, 2020Oct 28, 2020

    • GunnVistaPingry_US

      Public
      The code for GunnVistaPingry_US's Odigos Project
      crisprgenomegrna
      HTML
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 28, 2020Oct 28, 2020

    • UIUC_Illinois

      Public
      GitHub repository for the 2020 Illinois iGEM team project, VIRALIZER.
      JavaScript
      •1•0•0•0•Updated Oct 28, 2020Oct 28, 2020

    • TAU_Israel

      Public
      This repository contains the two products designed by the Tel Aviv University 2020 iGEM team. These include the EFM Optimizer and the Staubility Enhancer. The compiled software is presented within, as well as the component scripts, and sampled inputs and outputs
      Jupyter Notebook
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Oct 28, 2020Oct 28, 2020

    • Heidelberg_2020

      Public
      Github repository for the iGEM Team Heidelberg 2020 judging release software.
      pythonlearningregistrymachinedeepproteinfusionrnamachinelearningrosetta
      Python
      •2•5•0•0•Updated Oct 28, 2020Oct 28, 2020

    • ClusteRsy-Linkoping

      Public
      ClusteRsy is a user-friendly software for transcriptome analysis and is developed by the Linköping iGEM team 2020.
      R
      •
      Other
      •0•3•0•0•Updated Oct 27, 2020Oct 27, 2020

    • Moscow_iGEM2020_v2

      Public
      Kinetic model of the detection system with CasX
      0•0•0•0•Updated Oct 27, 2020Oct 27, 2020

    • igem_epfl_2020

      Public
      iGEM 2020 CAD and code files
      C++
      •0•0•0•0•Updated Oct 27, 2020Oct 27, 2020

    • Groningen

      Public
      The population dynamics models focusing on the Globodera pallida nematode and the bacterial biofilm on the roots.
      Mathematica
      •
      MIT License
      •0•0•0•0•Updated Oct 27, 2020Oct 27, 2020

    • SJTU_software_2020

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 27, 2020Oct 27, 2020