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    12 repositories

    • pgs-method-compare

      Public
      A website that describes the performance of PGS development methods across five European biobanks
      R
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 26, 2024Nov 26, 2024

    • GxE_SESDisease

      Public
      Code for the project "Gene-environment interplay of socioeconomic indices and complex diseases"
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • onset_prediction

      Public
      This project includes different R packages to help working with INTERVENE longitudinal and phenotype files with the goal of predicting the late-onset of different endpoints using Cox-proporiontal hazards models.
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • INTERVENE_PheRS

      Public
      Scripts for PheRS analysis for the INTERVENE flagship project
      Python
      •0•0•1•0•Updated Nov 13, 2024Nov 13, 2024

    • pgsCompaR

      Public
      An R data package containing PGS methods comparison data and results across five European biobanks
      R
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • flagship

      Public
      Code for the flagship project (WP2)
      R
      •
      MIT License
      •0•2•1•0•Updated Jun 18, 2024Jun 18, 2024

    • prspipe

      Public
      Pipeline to calculate PRS from summary statistics
      Jupyter Notebook
      •
      MIT License
      •0•9•2•0•Updated Dec 28, 2023Dec 28, 2023

    • synthetic_data

      Public
      Software program for generating synthetic datasets for genotypes and phenotypes
      bioinformaticsgenomicsgeneticssimulationjuliagenerative-modelpolygenic-risk-scoresphenotypingdata-generatorphenotypes
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•13•6•0•Updated Jun 1, 2023Jun 1, 2023

    • GenoPred

      Public
      Genotype-based Prediction (GenoPred)
      HTML
      •
      GNU General Public License v3.0
      •23•2•0•0•Updated Mar 23, 2023Mar 23, 2023

    • intervene-job-manager

      Public
      Help tools to use CSC SD Connect service to manage INTERVENE jobs.
      Python
      •0•0•0•0•Updated Oct 26, 2022Oct 26, 2022

    • DBSLMM

      Public
      Deterministic Bayesian Sparse Linear Mixed Model
      C++
      •3•0•0•0•Updated May 19, 2021May 19, 2021

    • pca_projection

      Public
      R
      •
      MIT License
      •3•0•0•0•Updated May 10, 2021May 10, 2021