Open Problems in Single-Cell Analysis

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30 packages

datasets/loaders/allen_brain_cell_atlas
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/datasets/loaders/allen_brain_cell_atlas

34
methods_cell_type_annotation/ssam
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_cell_type_annotation/ssam

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methods_segmentation/custom_segmentation
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_segmentation/custom_segmentation

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methods_transcript_assignment/basic_transcript_assignment
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/basic_transcript_assignment

20
methods_calculate_cell_volume/alpha_shapes
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_calculate_cell_volume/alpha_shapes

19
data_processors/process_dataset
Published Aug 30, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/data_processors/process_dataset

18
methods_qc_filter/basic_qc_filter
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_qc_filter/basic_qc_filter

18
methods_count_aggregation/basic_count_aggregation
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_count_aggregation/basic_count_aggregation

17
methods_normalization/normalize_by_volume
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_normalization/normalize_by_volume

15
datasets/loaders/tenx_xenium
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/datasets/loaders/tenx_xenium

6
metrics/similarity
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/metrics/similarity

2
methods_expression_correction/gene_efficiency_correction
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_expression_correction/gene_efficiency_correction

2
custom
Published Sep 19, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/custom

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basic
Published Sep 19, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/basic

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normalize_by_volume
Published Sep 19, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/normalize_by_volume

0
alpha_shapes
Published Sep 19, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/alpha_shapes

0
ssam
Published Sep 19, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/ssam

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gene_efficiency_correction
Published Sep 19, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/gene_efficiency_correction

0
basic_qc_filter
Published Sep 20, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/basic_qc_filter

0
methods/custom
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods/custom

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methods/basic
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods/basic

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metrics/similarity_metrics
Published Sep 20, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/metrics/similarity_metrics

0
methods/basic_qc_filter
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods/basic_qc_filter

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methods/alpha_shapes
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods/alpha_shapes

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methods/normalize_by_volume
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods/normalize_by_volume

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methods/ssam
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods/ssam

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methods/gene_efficiency_correction
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods/gene_efficiency_correction

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metrics_similarity/similarity_metrics
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/metrics_similarity/similarity_metrics

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methods_count_aggregation/basic
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_count_aggregation/basic

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methods_segmentation/custom
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_segmentation/custom

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