Open Problems in Single-Cell Analysis

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29 packages

methods/lgc_ensemble_train
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/methods/lgc_ensemble_train

28
metrics/mean_rowwise_error
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/metrics/mean_rowwise_error

24
process_dataset/bootstrap
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/process_dataset/bootstrap

24
process_dataset/run_limma
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/process_dataset/run_limma

23
metrics/mean_rowwise_correlation
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/metrics/mean_rowwise_correlation

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process_dataset/filter_obs
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/process_dataset/filter_obs

21
process_dataset/split_sc
Published Oct 30, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/process_dataset/split_sc

18
process_dataset/add_uns_metadata
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/process_dataset/add_uns_metadata

18
process_dataset/compute_pseudobulk
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/process_dataset/compute_pseudobulk

17
process_dataset/filter_vars
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/process_dataset/filter_vars

17
methods/transformer_ensemble
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/methods/transformer_ensemble

6
control_methods/mean_across_compounds
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/control_methods/mean_across_compounds

6
methods/lgc_ensemble_predict
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/methods/lgc_ensemble_predict

6
control_methods/zeros
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/control_methods/zeros

6
control_methods/sample
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/control_methods/sample

6
control_methods/mean_outcome
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/control_methods/mean_outcome

6
methods/scape
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/methods/scape

6
methods/nn_retraining_with_pseudolabels
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/methods/nn_retraining_with_pseudolabels

6
methods/pyboost
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/methods/pyboost

6
methods/jn_ap_op2
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/methods/jn_ap_op2

6
control_methods/ground_truth
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/control_methods/ground_truth

6
methods/lgc_ensemble_prepare
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/methods/lgc_ensemble_prepare

6
control_methods/mean_across_celltypes
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/control_methods/mean_across_celltypes

6
process_dataset/generate_id_map
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/process_dataset/generate_id_map

6
methods/lgc_ensemble_direct
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/methods/lgc_ensemble_direct

4
process_dataset/convert_kaggle_h5ad_to_parquet
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/process_dataset/convert_kaggle_h5ad_to_parquet

4
process_dataset/convert_h5ad_to_parquet
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/process_dataset/convert_h5ad_to_parquet

4
common/create_component
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/common/create_component

3
common/sync_test_resources
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in task_perturbation_prediction/common/sync_test_resources

3