Repositories list

• PUMI

  Public
  PUMI: neuroimaging Pipelines Using Modular workflow Integration

  neuroimagingpreprocessingdwi+ 2nipyperesting-state-fmri

  Python

  •

  GNU General Public License v3.0

  •0•1•41•3•Updated Nov 25, 2024Nov 25, 2024

• AdaptiveSplitAnalysis

  Public
  Analysis for the AdaptiveSplit's manuscript.

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• placebo-conditioning-meta-analysis

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• pni-lab.github.io

  Public
  Lab website

  mystmystmdpni-lab+ 1predictive-neuroscience

  2•1•0•0•Updated Oct 22, 2024Oct 22, 2024

• adaptivesplit

  Public
  External validation of machine learning models with adaptive sample splitting

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

• RLBF

  Public
  Reinforcement Learning via Brain Feedback (RLBF)

  Python

  •0•0•0•0•Updated Aug 30, 2024Aug 30, 2024

• nifeatures

  Public
  Features engineering for neuroimaging data

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 14, 2024Aug 14, 2024

• dwi-replicability

  Public
  Jupyter Notebook

  •1•1•0•0•Updated Jul 4, 2024Jul 4, 2024

• connattractor

  Public
  Connectome-based Hopfiled Neural Networks (fcHNN)

  fmrifunctional-connectivityhopfield-neural-network+ 1computational-neuroimaging

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •3•6•0•1•Updated Apr 4, 2024Apr 4, 2024

• fmriprep_cluster

  Public
  Shell

  •0•0•3•0•Updated Mar 8, 2024Mar 8, 2024

• rpn-subscores

  Public
  Unsupervised sub-scores of the RPN-signature

  0•0•0•0•Updated Nov 14, 2023Nov 14, 2023

• ctp-signature

  Public
  Cortical thickness signature of individual sensitivity to pain

  Jupyter Notebook

  •

  Other

  •2•0•1•0•Updated Sep 6, 2023Sep 6, 2023

• mlconfound

  Public
  Tools for analyzing and quantifying effects of confounder variables on machine learning model predictions.

  predictive-modelingpermutation-testconfounders+ 3conditional-independencepythonmachine-learning

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•7•1•0•Updated Apr 6, 2023Apr 6, 2023

• programming_101

  Public
  This repo holds the course materials for the programming crash course held by the PNI-lab Essen!

  0•2•0•0•Updated Feb 23, 2023Feb 23, 2023

• atlas_opt_maria

  Public
  Atlas optimization with pumi (student lab rotation project)

  Jupyter Notebook

  •0•0•0•0•Updated Feb 20, 2023Feb 20, 2023

• old_website

  Public
  Website of the PNI research lab

  HTML

  •1•0•0•0•Updated Jan 6, 2023Jan 6, 2023

• mlconfound-manuscript

  Public
  Analysis code and Latex source of the manuscript describing the conditional permutation test of confounding bias in predictive modelling.

  machine-learningstatistical-testspermutation-test+ 2conditional-independenceconfounder

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Jul 14, 2022Jul 14, 2022

• ALIIAS

  Public
  Python

  •

  GNU General Public License v3.0

  •1•1•10•0•Updated Jul 6, 2022Jul 6, 2022

• .github

  Public
  README.md for the public organization profile

  The Unlicense

  •0•0•0•0•Updated Jun 15, 2022Jun 15, 2022

• RPN-signature

  Public
  Supplementary analasys for The Resting-state Pain susceptibility Network signature.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •8•0•0•1•Updated Jun 15, 2022Jun 15, 2022

• predmod_lecture

  Public
  Jupyter Book "Introduction to predictive modelling"

  Jupyter Notebook

  •0•0•0•0•Updated Feb 22, 2022Feb 22, 2022

• teaching

  Public
  Python Notebooks for teaching purposes

  Jupyter Notebook

  •0•0•0•0•Updated Nov 3, 2020Nov 3, 2020

• lab-website

  Public
  source code of the lab website

  0•0•0•0•Updated Jul 3, 2020Jul 3, 2020