RNA Bioscience Initiative (RBI)

All

74 repositories

antigen-exchange
Public
Analysis for antigen exchange paper
HTML
•0•0•0•0•Updated Dec 3, 2024Dec 3, 2024
molb-7950
Public
MOLB 7950: Informatics and Statistics for Molecular Biology
HTML
•0•3•6•1•Updated Nov 26, 2024Nov 26, 2024
aa-tRNA-seq
Public
Public-facing repo for aa-tRNA-seq pre-print
Python
•0•0•0•0•Updated Nov 20, 2024Nov 20, 2024
2a-peptide-search
Public
HMM models of the 2A peptide and DB search results
HTML
•0•0•2•0•Updated Oct 31, 2024Oct 31, 2024
molb-7950-data
Public
Data repository for MOLB 7950
0•0•0•0•Updated Oct 27, 2024Oct 27, 2024
scraps
Public
Single-cell RNA Processing Software
Python
•
MIT License
•4•11•4•0•Updated Oct 15, 2024Oct 15, 2024
valr
Public
Genome Interval Arithmetic in R
genome interval-arithmetic bedtools
R
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Other
•25•89•0•0•Updated Oct 12, 2024Oct 12, 2024
rhumba
Public
Snakemake pipelines for RNA sequencing data
rna-seq rna-seq-analysis rna-seq-pipeline
C
•2•2•3•0•Updated Sep 1, 2024Sep 1, 2024
raer
Public
Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
rna-seq-analysis single-cell-rna-seq bioconductor-package single-cell-analysis
R
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Other
•2•7•2•0•Updated Aug 29, 2024Aug 29, 2024
clustifyr
Public
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
rna-seq single-cell-rna-seq clusters marker-genes assign-identities
R
•
MIT License
•14•113•0•0•Updated Aug 29, 2024Aug 29, 2024
pneuro-onc-browsers
Public
Pediatric Neuro-oncology Cell Atlas
TeX
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MIT License
•0•0•1•0•Updated Aug 28, 2024Aug 28, 2024
lnsc-cell-browser
Public
LNSC cell browser
R
•0•0•1•0•Updated Aug 14, 2024Aug 14, 2024
rbitemplate
Public
RBI pkgdown template
R
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Other
•0•0•1•0•Updated Aug 4, 2024Aug 4, 2024
tRNA004
Public
Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking
nanopore rnaseq trna nanopore-sequencing rna-modifications directrna trnaseq
Python
•1•2•1•0•Updated Jul 30, 2024Jul 30, 2024
tRNAseq-logistics
Public
Nanopore tRNA sequencing logistics (Old chemistry)
CSS
•0•0•0•0•Updated Jul 22, 2024Jul 22, 2024
remora
Public
Methylation/modified base calling separated from basecalling.
Python
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Other
•21•0•0•0•Updated Jun 28, 2024Jun 28, 2024
gene_model_plot
Public
Python package designed to visualize gene models from GTF files and variants from VCF files.
Jupyter Notebook
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MIT License
•0•2•0•0•Updated Jun 11, 2024Jun 11, 2024
spatialshiny
Public
Browser for Spatial Transcriptomics, built on R Shiny
R
•1•2•0•0•Updated Apr 29, 2024Apr 29, 2024
detectrms-rs
Public
Fast detection of rna modifications sites
Rust
•0•1•1•0•Updated Jan 23, 2024Jan 23, 2024
deepsort-rs
Public
sort demultiplexed reads based on deeplexicon outputs
Rust
•0•1•0•0•Updated Dec 18, 2023Dec 18, 2023
bmsc-7810-pbda
Public
BMSC 7810: Practical biological data analysis with R/RStudio
HTML
•1•1•2•0•Updated Dec 14, 2023Dec 14, 2023
fuzzyfastq-rs
Public
Rust implementation of fuzzy matching of sequences in FASTQ files
Rust
•0•1•0•0•Updated Dec 5, 2023Dec 5, 2023
ggtrace
Public
ggplot2 geoms to outline groups of data points
ggplot2-geom visualization ggplot2
R
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Other
•2•15•3•0•Updated Nov 24, 2023Nov 24, 2023
djvdj
Public
An R package to analyze single-cell V(D)J data
immunology immunoinformatics single-cell-rna-seq vdj
R
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Other
•4•24•16•2•Updated Nov 13, 2023Nov 13, 2023
cellranger
Public
10x Genomics Single Cell Analysis
Rust
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Other
•94•0•0•0•Updated Nov 10, 2023Nov 10, 2023
clustifyrdatahub
Public
External single-cell mRNA sequencing data sets for use with clustifyr
single-cell rna-seq-analysis single-cell-rna-seq
R
•
MIT License
•1•8•0•0•Updated Nov 7, 2023Nov 7, 2023
raerdata
Public
collection of datasets to illustrate functionality in the raer pacakge
R
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MIT License
•0•0•0•0•Updated Oct 12, 2023Oct 12, 2023
morrison-lnsc
Public
Integrated analysis of CHIKV LNSC datasets
R
•0•0•0•0•Updated Sep 28, 2023Sep 28, 2023
reis-rbi-pilot-fat-body
Public
Shell
•0•0•0•0•Updated Aug 17, 2023Aug 17, 2023
ameloblast-scrnaseq
Public
scRNA-seq analysis of ameloblasts
R
•0•0•0•0•Updated Aug 3, 2023Aug 3, 2023