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Mirth-Snippets

This repository contains various code snippets and utilities for working with Mirth Connect, AWS, databases, JWT, and other integration-related tasks.

Repository Structure

The repository is organized by different use cases. Below is a summary of the main scripts and documentation included in this repository.

Mirth Connect Related Scripts

  • AWS_getSecret.js: Retrieves secrets from AWS Secrets Manager for use within Mirth Connect.
  • ActiveMQ_JMS_Listener.js: Script to listen for messages on ActiveMQ using JMS.
  • ActiveMQ_JMS_Sender.js: Script to send messages to ActiveMQ using JMS.
  • MirthSSH_4.5.md: Documentation on using SSH with Mirth Connect.
  • HL7 add FHIR.xml: Example of adding FHIR to an HL7 message.
  • mirth_and_MSSQL_withTLS.md: Guide for connecting Mirth Connect to MSSQL with TLS.
  • mirth_backup.md: Mirth backup strategy and instructions.
  • mirth_bash_backup.sh: A bash script for automating Mirth backups.

Database and Data Processing Utilities

  • DBCP2.js: Database connection pooling using DBCP2.
  • DBReadertoCSV.js: Converts database reader output to CSV format.
  • ResultSetUtil.js: Utility functions to manipulate ResultSet data.
  • executeSharedDBStatement.js: Executes shared database statements across multiple sources.

JWT (JSON Web Tokens)

  • JWTviaJS.js: Generates JWT tokens using JavaScript. VERY SLOW
  • JWTviaJose4jlib.js: Generates JWT tokens using the Jose4j Java library.
  • epicJWTforBackend_uses_jsrassign.js: Generates JWT for backend systems using jsrassign.
  • epicJWTusingNimbusJava.js: Generates JWT using the Nimbus Java JWT library. I USE THIS ONE
  • nimbus-jose-jwt.jar: JAR file for Nimbus Jose JWT library. NEEDED FOR epicJWTusingNimbusJava

File Manipulation Utilities

  • PDFtoTIFF.js: Converts PDF files to TIFF format.
  • combineBase64PDFs.js: Combines multiple Base64-encoded PDFs into one file.
  • create_dir.js: Creates directories dynamically within scripts.
  • create_zip_with_wildcards.js: Zips files based on wildcard patterns.
  • movefile.js: Moves files between directories.

SFTP and SSH Utilities

  • sftp_get_to_attachment_newJsch.js: Retrieves files via SFTP using the JSch library.
  • sftpviaSSHJ.js: Handles SFTP transfers using the SSHJ library.
  • loginMirthConnectAPI.js: Automates login to the Mirth Connect API using SSH.

Miscellaneous Utilities

  • bluebutton_simple_api.js: Example of a simple Blue Button API.
  • createDebugMap.js: Creates a debug map for tracking processing information.
  • createListofAttachments.js: Generates a list of attachments from a source.
  • dynamic_source_file_reader_name.js: Dynamically sets source file names during processing.
  • groupAndSum.js: Groups and sums data based on specified criteria.
  • replaceNullsWithEmptyStrings.js: Replaces null values with empty strings in data structures.
  • router.routeMessage.js
  • select_named_headers_from_sourceMap.js: Selects named headers from a source map.
  • sum_and_group_v2.js: Advanced grouping and summing of data.

Documentation and SQL Queries

  • HAPI_FHIR_example.md: Documentation on integrating HAPI FHIR with Mirth Connect.
  • message_response_time.sql: SQL query to analyze message response times.
  • mssql_jdbc_connect_strings.txt: MSSQL JDBC connection strings.

License

This project is licensed under the MIT License - see the LICENSE file for details.

Contributions

Feel free to submit issues or pull requests if you have improvements or find bugs in the scripts.