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Some minor fixes

Some minor fixes #483

Workflow file for this run

name: pastastore
on:
# Trigger the workflow on push or pull request on master,
# and only on pull-requests on dev branch
push:
branches:
- master
- dev
pull_request:
branches:
- master
- dev
jobs:
lint:
name: Lint
runs-on: ubuntu-latest
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Setup Python
uses: actions/setup-python@v5
with:
python-version: 3.9
cache: "pip"
cache-dependency-path: pyproject.toml
- name: Install Python dependencies
run: |
pip install .
pip install ".[lint]"
- name: Run black
uses: psf/black@stable
with:
options: "--check --diff"
jupyter: true
- name: Run isort
run: |
isort --check --diff --profile=black ./pastastore
- name: Run flake8
run: |
flake8 --count --show-source --exit-zero --max-line-length=88 ./pastastore
flake8 --count --exit-zero --max-line-length=88 --statistics ./pastastore
test:
name: Tests
needs: lint
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.9", "3.10", "3.11"]
pastas-version:
[
"git+https://github.com/pastas/[email protected]",
"git+https://github.com/pastas/[email protected]",
"git+https://github.com/pastas/[email protected]",
"git+https://github.com/pastas/[email protected]",
"git+https://github.com/pastas/pastas.git@dev",
]
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
cache: "pip"
cache-dependency-path: pyproject.toml
- name: Install dependencies
run: |
pip install --upgrade pip
pip install ${{ matrix.pastas-version }}
pip install -e .[test]
- name: Run pytest
run: |
pytest -m "not bgmap"
- name: Test backgroundmap once
if: ${{ matrix.python-version == '3.9' && matrix.pastas-version == 'git+https://github.com/pastas/pastas.git@dev' }}
run: |
pytest -m "bgmap"
- name: Run codacy-coverage-reporter
if: ${{ github.repository == 'pastas/pastastore' && success() }}
uses: codacy/codacy-coverage-reporter-action@master
with:
project-token: ${{ secrets.CODACY_API_TOKEN }}
coverage-reports: coverage.xml