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Zombie fix attempts #616

Zombie fix attempts

Zombie fix attempts #616

Workflow file for this run

# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
# - {os: macOS-latest, r: 'release', rtools: ''}
- {os: windows-latest, r: 'release', rtools: '42'}
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release', rtools: ''}
- {os: ubuntu-latest, r: 'release', rtools: ''}
- {os: ubuntu-latest, r: 'oldrel-1', rtools: ''}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
steps:
- uses: actions/checkout@v2
- uses: n1hility/cancel-previous-runs@v2
with:
token: ${{ secrets.GITHUB_TOKEN }}
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/[email protected]
with:
r-version: ${{ matrix.config.r }}
rtools-version: ${{ matrix.config.rtools }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
# As cmdstanr is not yet on CRAN, configure the action to only install the
# 'Depends' packages by default and then manually specify the 'Suggests'
# packages that are needed for R CMD CHECK
- uses: r-lib/actions/setup-r-dependencies@v2
with:
dependencies: NA
extra-packages: |
R.rsp
knitr
rcmdcheck
rmarkdown
lme4
mice
BH
MCMCglmm
ape
stan-dev/cmdstanr
RcppEigen
testthat
emmeans
projpred
RWiener
rtdists
extraDistr
spdep
mnormt
splines2
arm
statmod
diffobj
- name: Build Cmdstan
run: |
cmdstanr::check_cmdstan_toolchain(fix = TRUE)
cmdstanr::install_cmdstan(cores = parallel::detectCores())
shell: Rscript {0}
- uses: r-lib/actions/check-r-package@v2
with:
build_args: 'c("--no-manual", "--no-build-vignettes")'
args: 'c("--no-manual", "--as-cran", "--ignore-vignettes")'