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Examples of how to use PEP to run pipelines with different workflow systems

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PEP Compatible Pipelines

Documentation and code examples for the following:

  1. pep-cwl
  2. pep-nextflow
  3. pep-pypiper
  4. pep-snakemake

All examples use peppy >= v0.40.0, looper >= 1.6.0 and piper>=0.14.0

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Examples of how to use PEP to run pipelines with different workflow systems

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