Add a "Generate Report" button to generate a results report.

[donaldcampbelljr]

We want to be able to generate a results report via button for results that have been reported to PEPHub via Pipestat and are defined via a pipestat output schema.

[nleroy917]

How might this work? Is there some configuration in pipestat that does this? I.e., does this need to be a new endpoint or can it be done in-browser. Is there an example output?

[donaldcampbelljr]

We will have a PEP that contains results reported via pipestat and the PEP must be associated with a pipestat output schema.

From this information, a report can be generated. Originally, we discussed using the pipestat summarize function (which generates a local html report) but we decided that this report generation via PEPHub should be a new implementation.

A current example PEP where I pushed results via pipestat: https://pephub.databio.org/donaldcampbelljr/pipestat_demo?tag=default
However, currently, PEPHub does not know which output schema I used for this reporting!

For any reported statistics, this should be reasonably easy. However, if we wish to show images, then Pipestat will need to push images to s3 and the reported image path will need to point to the s3 location of the images. This is discussed a bit more in this pipestat issue: pepkit/pipestat#195

For an example of the kind of html report pipestat summarize generates: https://pepatac.databio.org/en/latest/files/examples/gold/gold_summary.html

[nleroy917]

Pipestat will need to push images to s3 and the reported image path will need to point to the s3 location of the images

So, this doesn't have much of an implication to PEPhub, right?

[donaldcampbelljr]

Pipestat will need to push images to s3 and the reported image path will need to point to the s3 location of the images

So, this doesn't have much of an implication to PEPhub, right?

Where will the report generation code live? That code needs to display an image from an s3 path (if an image is a reported result to s3).

[nleroy917]

• convert the Jinja HTML templates to JSX.
• For piptestat compatible PEPS, a button that opens new window with the correct output.

[donaldcampbelljr]

Per discussion, this could be a React application that lives within Pipestat.
A hash router must be used so that the application can run locally.