sapporo.yml

name: Sapporo CI

on:
  pull_request:
    branches: [main]
  push:
    branches: [main]

jobs:
  test:
    timeout-minutes: 10
    runs-on: ubuntu-latest

    services:
      postgres:
        image: postgres:14.6
        env:
          POSTGRES_DB: irida_next_test
          POSTGRES_PASSWORD: test
          POSTGRES_USER: test
          POSTGRES_HOST: postgres
        ports:
          - 5432:5432
        # Set health checks to wait until postgres has started
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5

    steps:
      - name: Check out code
        uses: actions/checkout@v4
      - name: Set up Ruby
        uses: ruby/setup-ruby@v1
        with:
          bundler-cache: true # runs 'bundle install' and caches installed gems automatically
      - name: Set up PNPM
        uses: pnpm/action-setup@v4
        with:
          version: 9
      - name: Use Node.js 20
        uses: actions/setup-node@v4
        with:
          node-version: 20
          cache: "pnpm"
      - name: Install dependencies
        run: pnpm install
      - name: Download Sapporo
        uses: actions/checkout@v3
        with:
          repository: phac-nml/sapporo-service
          ref: irida-next
          path: ./sapporo
      - name: Build Sapporo
        run: |
          cd sapporo
          IRIDA_NEXT_PATH=${GITHUB_WORKSPACE}/tmp MYUID="$(id -u)" MYGID="$(id -g)" docker compose -f compose.irida-next.yml up -d --build
          cd ..
      - name: Run Sapporo
        uses: JarvusInnovations/background-action@v1
        with:
          run: |
            IRIDA_NEXT_PATH=${GITHUB_WORKSPACE}/tmp MYUID="$(id -u)" MYGID="$(id -g)" docker compose -f compose.irida-next.yml exec app bash -c "sapporo"
          wait-on: http-get://localhost:1122/service-info
          wait-for: 2m
          working-directory: sapporo
      - name: Update permissions
        run: sudo chmod -R 777 ${GITHUB_WORKSPACE}
      - name: Run tests
        run: |
          bin/rails test test/integration/sapporo.rb