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HashTable.cpp
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HashTable.cpp
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/*
* This file is part of the BSGS distribution (https://github.com/JeanLucPons/Kangaroo).
* Copyright (c) 2020 Jean Luc PONS.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, version 3.
*
* This program is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#include "HashTable.h"
#include <stdio.h>
#include <math.h>
#ifndef WIN64
#include <string.h>
#endif
#define GET(hash,id) E[hash].items[id]
HashTable::HashTable() {
memset(E,0,sizeof(E));
}
void HashTable::Reset() {
for(uint32_t h = 0; h < HASH_SIZE; h++) {
if(E[h].items) {
for(uint32_t i = 0; i<E[h].nbItem; i++)
free(E[h].items[i]);
}
safe_free(E[h].items);
E[h].maxItem = 0;
E[h].nbItem = 0;
}
}
uint64_t HashTable::GetNbItem() {
uint64_t totalItem = 0;
for(uint64_t h = 0; h < HASH_SIZE; h++)
totalItem += (uint64_t)E[h].nbItem;
return totalItem;
}
ENTRY *HashTable::CreateEntry(int128_t *x,int128_t *d) {
ENTRY *e = (ENTRY *)malloc(sizeof(ENTRY));
e->x.i64[0] = x->i64[0];
e->x.i64[1] = x->i64[1];
e->d.i64[0] = d->i64[0];
e->d.i64[1] = d->i64[1];
return e;
}
#define ADD_ENTRY(entry) { \
/* Shift the end of the index table */ \
for (int i = E[h].nbItem; i > st; i--) \
E[h].items[i] = E[h].items[i - 1]; \
E[h].items[st] = entry; \
E[h].nbItem++;}
void HashTable::Convert(Int *x,Int *d,uint32_t type,uint64_t *h,int128_t *X,int128_t *D) {
uint64_t sign = 0;
uint64_t type64 = (uint64_t)type << 62;
X->i64[0] = x->bits64[0];
X->i64[1] = x->bits64[1];
// Probability of failure (1/2^128)
if(d->bits64[3] > 0x7FFFFFFFFFFFFFFFULL) {
Int N(d);
N.ModNegK1order();
D->i64[0] = N.bits64[0];
D->i64[1] = N.bits64[1] & 0x3FFFFFFFFFFFFFFFULL;
sign = 1ULL << 63;
} else {
D->i64[0] = d->bits64[0];
D->i64[1] = d->bits64[1] & 0x3FFFFFFFFFFFFFFFULL;
}
D->i64[1] |= sign;
D->i64[1] |= type64;
*h = (x->bits64[2] & HASH_MASK);
}
#define AV1() if(pnb1) { ::fread(&e1,32,1,f1); pnb1--; }
#define AV2() if(pnb2) { ::fread(&e2,32,1,f2); pnb2--; }
int HashTable::MergeH(uint32_t h,FILE* f1,FILE* f2,FILE* fd,uint32_t* nbDP,uint32_t *duplicate,Int* d1,uint32_t* k1,Int* d2,uint32_t* k2) {
// Merge by line
// N comparison but avoid slow item allocation
// return ADD_OK or ADD_COLLISION if a COLLISION is detected
uint32_t nb1;
uint32_t m1;
uint32_t nb2;
uint32_t m2;
*duplicate = 0;
*nbDP = 0;
::fread(&nb1,sizeof(uint32_t),1,f1);
::fread(&m1,sizeof(uint32_t),1,f1);
::fread(&nb2,sizeof(uint32_t),1,f2);
::fread(&m2,sizeof(uint32_t),1,f2);
// Maximum in destination
uint32_t nbd = 0;
uint32_t md = nb1 + nb2;
if(md==0) {
::fwrite(&md,sizeof(uint32_t),1,fd);
::fwrite(&md,sizeof(uint32_t),1,fd);
return ADD_OK;
}
ENTRY *output = (ENTRY *)malloc( md * sizeof(ENTRY) );
ENTRY e1;
ENTRY e2;
uint32_t pnb1 = nb1;
uint32_t pnb2 = nb2;
AV1();
AV2();
bool end1 = (nb1 == 0);
bool end2 = (nb2 == 0);
bool collisionFound = false;
while(!(end1 && end2)) {
if( !end1 && !end2 ) {
int comp = compare(&e1.x,&e2.x);
if(comp < 0) {
memcpy(output+nbd,&e1,32);
nbd++;
AV1();
nb1--;
} else if (comp==0) {
if((e1.d.i64[0] == e2.d.i64[0]) && (e1.d.i64[1] == e2.d.i64[1])) {
*duplicate = *duplicate + 1;
} else {
// Collision
CalcDistAndType(e1.d,d1,k1);
CalcDistAndType(e2.d,d2,k2);
collisionFound = true;
}
memcpy(output + nbd,&e1,32);
nbd++;
AV1();
AV2();
nb1--;
nb2--;
} else {
memcpy(output + nbd,&e2,32);
nbd++;
AV2();
nb2--;
}
} else if( !end1 && end2 ) {
memcpy(output + nbd,&e1,32);
nbd++;
AV1();
nb1--;
} else if( end1 && !end2) {
memcpy(output + nbd,&e2,32);
nbd++;
AV2();
nb2--;
}
end1 = (nb1 == 0);
end2 = (nb2 == 0);
}
// write output
// Round md to next multiple of 4
if(nbd%4==0) {
md = nbd;
} else {
md = ((nbd/4)+1)*4;
}
::fwrite(&nbd,sizeof(uint32_t),1,fd);
::fwrite(&md,sizeof(uint32_t),1,fd);
::fwrite(output,32,nbd,fd);
free(output);
*nbDP = nbd;
return (collisionFound?ADD_COLLISION:ADD_OK);
}
int HashTable::Add(Int *x,Int *d,uint32_t type) {
int128_t X;
int128_t D;
uint64_t h;
Convert(x,d,type,&h,&X,&D);
ENTRY* e = CreateEntry(&X,&D);
return Add(h,e);
}
void HashTable::ReAllocate(uint64_t h,uint32_t add) {
E[h].maxItem += add;
ENTRY** nitems = (ENTRY**)malloc(sizeof(ENTRY*) * E[h].maxItem);
memcpy(nitems,E[h].items,sizeof(ENTRY*) * E[h].nbItem);
free(E[h].items);
E[h].items = nitems;
}
int HashTable::Add(uint64_t h,int128_t *x,int128_t *d) {
ENTRY *e = CreateEntry(x,d);
return Add(h,e);
}
void HashTable::CalcDistAndType(int128_t d,Int* kDist,uint32_t* kType) {
*kType = (d.i64[1] & 0x4000000000000000ULL) != 0;
int sign = (d.i64[1] & 0x8000000000000000ULL) != 0;
d.i64[1] &= 0x3FFFFFFFFFFFFFFFULL;
kDist->SetInt32(0);
kDist->bits64[0] = d.i64[0];
kDist->bits64[1] = d.i64[1];
if(sign) kDist->ModNegK1order();
}
int HashTable::Add(uint64_t h,ENTRY* e) {
if(E[h].maxItem == 0) {
E[h].maxItem = 16;
E[h].items = (ENTRY **)malloc(sizeof(ENTRY *) * E[h].maxItem);
}
if(E[h].nbItem == 0) {
E[h].items[0] = e;
E[h].nbItem = 1;
return ADD_OK;
}
if(E[h].nbItem >= E[h].maxItem - 1) {
// We need to reallocate
ReAllocate(h,4);
}
// Search insertion position
int st,ed,mi;
st = 0; ed = E[h].nbItem - 1;
while(st <= ed) {
mi = (st + ed) / 2;
int comp = compare(&e->x,&GET(h,mi)->x);
if(comp<0) {
ed = mi - 1;
} else if (comp==0) {
if((e->d.i64[0] == GET(h,mi)->d.i64[0]) && (e->d.i64[1] == GET(h,mi)->d.i64[1])) {
// Same point added 2 times or collision in same herd !
return ADD_DUPLICATE;
}
// Collision
CalcDistAndType(GET(h,mi)->d , &kDist, &kType);
return ADD_COLLISION;
} else {
st = mi + 1;
}
}
ADD_ENTRY(e);
return ADD_OK;
}
int HashTable::compare(int128_t *i1,int128_t *i2) {
uint64_t *a = i1->i64;
uint64_t *b = i2->i64;
if(a[1] == b[1]) {
if(a[0] == b[0]) {
return 0;
} else {
return (a[0] > b[0]) ? 1 : -1;
}
} else {
return (a[1] > b[1]) ? 1 : -1;
}
}
std::string HashTable::GetSizeInfo() {
char *unit;
uint64_t totalByte = sizeof(E);
uint64_t usedByte = HASH_SIZE*2*sizeof(uint32_t);
for (int h = 0; h < HASH_SIZE; h++) {
totalByte += sizeof(ENTRY *) * E[h].maxItem;
totalByte += sizeof(ENTRY) * E[h].nbItem;
usedByte += sizeof(ENTRY) * E[h].nbItem;
}
unit = "MB";
double totalMB = (double)totalByte / (1024.0*1024.0);
double usedMB = (double)usedByte / (1024.0*1024.0);
if(totalMB > 1024) {
totalMB /= 1024;
usedMB /= 1024;
unit = "GB";
}
if(totalMB > 1024) {
totalMB /= 1024;
usedMB /= 1024;
unit = "TB";
}
char ret[256];
sprintf(ret,"%.1f/%.1f%s",usedMB,totalMB,unit);
return std::string(ret);
}
std::string HashTable::GetStr(int128_t *i) {
std::string ret;
char tmp[256];
for(int n=3;n>=0;n--) {
::sprintf(tmp,"%08X",i->i32[n]);
ret += std::string(tmp);
}
return ret;
}
void HashTable::SaveTable(FILE* f) {
SaveTable(f,0,HASH_SIZE,true);
}
void HashTable::SaveTable(FILE* f,uint32_t from,uint32_t to,bool printPoint) {
uint64_t point = GetNbItem() / 16;
uint64_t pointPrint = 0;
for(uint32_t h = from; h < to; h++) {
fwrite(&E[h].nbItem,sizeof(uint32_t),1,f);
fwrite(&E[h].maxItem,sizeof(uint32_t),1,f);
for(uint32_t i = 0; i < E[h].nbItem; i++) {
fwrite(&(E[h].items[i]->x),16,1,f);
fwrite(&(E[h].items[i]->d),16,1,f);
if(printPoint) {
pointPrint++;
if(pointPrint > point) {
::printf(".");
pointPrint = 0;
}
}
}
}
}
void HashTable::SeekNbItem(FILE* f,bool restorePos) {
Reset();
#ifdef WIN64
uint64_t org = (uint64_t)_ftelli64(f);
#else
uint64_t org = (uint64_t)ftello(f);
#endif
SeekNbItem(f,0,HASH_SIZE);
if( restorePos ) {
// Restore position
#ifdef WIN64
_fseeki64(f,org,SEEK_SET);
#else
fseeko(f,org,SEEK_SET);
#endif
}
}
void HashTable::SeekNbItem(FILE* f,uint32_t from,uint32_t to) {
for(uint32_t h = from; h < to; h++) {
fread(&E[h].nbItem,sizeof(uint32_t),1,f);
fread(&E[h].maxItem,sizeof(uint32_t),1,f);
uint64_t hSize = 32ULL * E[h].nbItem;
#ifdef WIN64
_fseeki64(f,hSize,SEEK_CUR);
#else
fseeko(f,hSize,SEEK_CUR);
#endif
}
}
void HashTable::LoadTable(FILE* f,uint32_t from,uint32_t to) {
Reset();
for(uint32_t h = from; h < to; h++) {
fread(&E[h].nbItem,sizeof(uint32_t),1,f);
fread(&E[h].maxItem,sizeof(uint32_t),1,f);
if(E[h].maxItem > 0)
// Allocate indexes
E[h].items = (ENTRY**)malloc(sizeof(ENTRY*) * E[h].maxItem);
for(uint32_t i = 0; i < E[h].nbItem; i++) {
ENTRY* e = (ENTRY*)malloc(sizeof(ENTRY));
fread(&(e->x),16,1,f);
fread(&(e->d),16,1,f);
E[h].items[i] = e;
}
}
}
void HashTable::LoadTable(FILE *f) {
LoadTable(f,0,HASH_SIZE);
}
void HashTable::PrintInfo() {
uint16_t max = 0;
uint32_t maxH = 0;
uint16_t min = 65535;
uint32_t minH = 0;
double std = 0;
double avg = (double)GetNbItem() / (double)HASH_SIZE;
for(uint32_t h=0;h<HASH_SIZE;h++) {
if(E[h].nbItem>max) {
max= E[h].nbItem;
maxH = h;
}
if(E[h].nbItem<min) {
min= E[h].nbItem;
minH = h;
}
std += (avg - (double)E[h].nbItem)*(avg - (double)E[h].nbItem);
}
std /= (double)HASH_SIZE;
std = sqrt(std);
uint64_t count = GetNbItem();
::printf("DP Size : %s\n",GetSizeInfo().c_str());
#ifdef WIN64
::printf("DP Count : %I64d 2^%.3f\n",count,log2((double)count));
#else
::printf("DP Count : %" PRId64 " 2^%.3f\n",count,log2(count));
#endif
::printf("HT Max : %d [@ %06X]\n",max,maxH);
::printf("HT Min : %d [@ %06X]\n",min,minH);
::printf("HT Avg : %.2f \n",avg);
::printf("HT SDev : %.2f \n",std);
//for(int i=0;i<(int)E[maxH].nbItem;i++) {
// ::printf("[%2d] %s\n",i,GetStr(&E[maxH].items[i]->x).c_str());
// ::printf("[%2d] %s\n",i,GetStr(&E[maxH].items[i]->d).c_str());
//}
}