diff --git a/main/_downloads/05db27c89d57715b7992e05a1c43c0ec/phasorpy_phasorplot.ipynb b/main/_downloads/05db27c89d57715b7992e05a1c43c0ec/phasorpy_phasorplot.ipynb index 461f45cd..8b39fc0c 100644 --- a/main/_downloads/05db27c89d57715b7992e05a1c43c0ec/phasorpy_phasorplot.ipynb +++ b/main/_downloads/05db27c89d57715b7992e05a1c43c0ec/phasorpy_phasorplot.ipynb @@ -22,7 +22,7 @@ }, "outputs": [], "source": [ - "import math\n\nimport numpy\n\nfrom phasorpy.plot import PhasorPlot" + "import math\n\nimport numpy\n\nfrom phasorpy.plot import PhasorPlot\n\nnumpy.random.seed(42)" ] }, { diff --git a/main/_downloads/315c4c52fb68082a731b192d944e2ede/tutorials_python.zip b/main/_downloads/315c4c52fb68082a731b192d944e2ede/tutorials_python.zip index 37e63f52..1df842cd 100644 Binary files a/main/_downloads/315c4c52fb68082a731b192d944e2ede/tutorials_python.zip and b/main/_downloads/315c4c52fb68082a731b192d944e2ede/tutorials_python.zip differ diff --git a/main/_downloads/5276fc0d396f20bf66ae8c3fb01d2b33/phasorpy_phasor_from_lifetime.ipynb b/main/_downloads/5276fc0d396f20bf66ae8c3fb01d2b33/phasorpy_phasor_from_lifetime.ipynb index f12a105a..f37ba3a0 100644 --- a/main/_downloads/5276fc0d396f20bf66ae8c3fb01d2b33/phasorpy_phasor_from_lifetime.ipynb +++ b/main/_downloads/5276fc0d396f20bf66ae8c3fb01d2b33/phasorpy_phasor_from_lifetime.ipynb @@ -22,7 +22,7 @@ }, "outputs": [], "source": [ - "import numpy\n\nfrom phasorpy.phasor import phasor_from_lifetime, phasor_to_polar\nfrom phasorpy.plot import PhasorPlot, plot_phasor, plot_polar_frequency\n\nrng = numpy.random.default_rng()" + "import numpy\n\nfrom phasorpy.phasor import phasor_from_lifetime, phasor_to_polar\nfrom phasorpy.plot import PhasorPlot, plot_phasor, plot_polar_frequency\n\nrng = numpy.random.default_rng(42)" ] }, { diff --git a/main/_downloads/6a1fbaf8a7fd286cb98b3fbee24eb682/phasorpy_phasorplot.py b/main/_downloads/6a1fbaf8a7fd286cb98b3fbee24eb682/phasorpy_phasorplot.py index 4d1d5d61..de626076 100644 --- a/main/_downloads/6a1fbaf8a7fd286cb98b3fbee24eb682/phasorpy_phasorplot.py +++ b/main/_downloads/6a1fbaf8a7fd286cb98b3fbee24eb682/phasorpy_phasorplot.py @@ -20,6 +20,8 @@ from phasorpy.plot import PhasorPlot +numpy.random.seed(42) + # %% # Empty phasor plot # ----------------- @@ -53,7 +55,6 @@ plot.plot([0.39, 0.4, 0.41], [0.21, 0.19, 0.2], 'x', label='3') plot.show() - # %% # Cursors # ------- @@ -114,7 +115,6 @@ plot.contour(real, imag) plot.show() - # %% # Image # ----- @@ -178,7 +178,6 @@ ) pyplot.show() - # %% # plot_phasor function # -------------------- diff --git a/main/_downloads/a5659940aa3f8f568547d47752a43172/tutorials_jupyter.zip b/main/_downloads/a5659940aa3f8f568547d47752a43172/tutorials_jupyter.zip index f727d6d8..a6c7bef0 100644 Binary files a/main/_downloads/a5659940aa3f8f568547d47752a43172/tutorials_jupyter.zip and b/main/_downloads/a5659940aa3f8f568547d47752a43172/tutorials_jupyter.zip differ diff --git a/main/_downloads/abc8ef465a9f08146eeb010f8ad275fd/phasorpy_phasor_from_lifetime.py b/main/_downloads/abc8ef465a9f08146eeb010f8ad275fd/phasorpy_phasor_from_lifetime.py index 97758d61..d57c29dc 100644 --- a/main/_downloads/abc8ef465a9f08146eeb010f8ad275fd/phasorpy_phasor_from_lifetime.py +++ b/main/_downloads/abc8ef465a9f08146eeb010f8ad275fd/phasorpy_phasor_from_lifetime.py @@ -19,7 +19,7 @@ from phasorpy.phasor import phasor_from_lifetime, phasor_to_polar from phasorpy.plot import PhasorPlot, plot_phasor, plot_polar_frequency -rng = numpy.random.default_rng() +rng = numpy.random.default_rng(42) # %% # Single-component lifetimes diff --git a/main/_downloads/bf9341a139a683d2ea1e508551acdd49/phasorpy_components.py b/main/_downloads/bf9341a139a683d2ea1e508551acdd49/phasorpy_components.py index d6c8e717..ea387435 100644 --- a/main/_downloads/bf9341a139a683d2ea1e508551acdd49/phasorpy_components.py +++ b/main/_downloads/bf9341a139a683d2ea1e508551acdd49/phasorpy_components.py @@ -16,6 +16,8 @@ from phasorpy.phasor import phasor_from_lifetime from phasorpy.plot import PhasorPlot +numpy.random.seed(42) + # %% # Fractions of combination of two components # ------------------------------------------ diff --git a/main/_downloads/ccecd4264e0158187b962766cb9fbe11/phasorpy_components.ipynb b/main/_downloads/ccecd4264e0158187b962766cb9fbe11/phasorpy_components.ipynb index e681d1c6..208c0a35 100644 --- a/main/_downloads/ccecd4264e0158187b962766cb9fbe11/phasorpy_components.ipynb +++ b/main/_downloads/ccecd4264e0158187b962766cb9fbe11/phasorpy_components.ipynb @@ -22,7 +22,7 @@ }, "outputs": [], "source": [ - "import matplotlib.pyplot as plt\nimport numpy\n\nfrom phasorpy.components import two_fractions_from_phasor\nfrom phasorpy.phasor import phasor_from_lifetime\nfrom phasorpy.plot import PhasorPlot" + "import matplotlib.pyplot as plt\nimport numpy\n\nfrom phasorpy.components import two_fractions_from_phasor\nfrom phasorpy.phasor import phasor_from_lifetime\nfrom phasorpy.plot import PhasorPlot\n\nnumpy.random.seed(42)" ] }, { diff --git a/main/_images/sphx_glr_phasorpy_components_001.png b/main/_images/sphx_glr_phasorpy_components_001.png index 4ecca80b..52e9a572 100644 Binary files a/main/_images/sphx_glr_phasorpy_components_001.png and b/main/_images/sphx_glr_phasorpy_components_001.png differ diff --git a/main/_images/sphx_glr_phasorpy_components_002.png b/main/_images/sphx_glr_phasorpy_components_002.png index ba05a839..31383f2d 100644 Binary files a/main/_images/sphx_glr_phasorpy_components_002.png and b/main/_images/sphx_glr_phasorpy_components_002.png differ diff --git a/main/_images/sphx_glr_phasorpy_components_003.png b/main/_images/sphx_glr_phasorpy_components_003.png index 7f18dac5..f9e2d47a 100644 Binary files a/main/_images/sphx_glr_phasorpy_components_003.png and b/main/_images/sphx_glr_phasorpy_components_003.png differ diff --git a/main/_images/sphx_glr_phasorpy_components_thumb.png b/main/_images/sphx_glr_phasorpy_components_thumb.png index 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+++ b/main/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:22.696** total execution time for 7 files **from all galleries**: +**00:26.564** total execution time for 7 files **from all galleries**: .. container:: @@ -32,24 +32,24 @@ Computation times * - Example - Time - Mem (MB) - * - :ref:`sphx_glr_tutorials_benchmarks_phasorpy_phasor_from_signal.py` (``../tutorials/benchmarks/phasorpy_phasor_from_signal.py``) - - 00:10.762 - - 0.0 * - :ref:`sphx_glr_tutorials_phasorpy_introduction.py` (``../tutorials/phasorpy_introduction.py``) - - 00:08.703 + - 00:13.430 + - 0.0 + * - :ref:`sphx_glr_tutorials_benchmarks_phasorpy_phasor_from_signal.py` (``../tutorials/benchmarks/phasorpy_phasor_from_signal.py``) + - 00:09.970 - 0.0 * - :ref:`sphx_glr_tutorials_phasorpy_fret.py` (``../tutorials/phasorpy_fret.py``) - - 00:01.698 + - 00:01.670 - 0.0 * - :ref:`sphx_glr_tutorials_phasorpy_phasorplot.py` (``../tutorials/phasorpy_phasorplot.py``) - - 00:00.680 + - 00:00.663 - 0.0 * - :ref:`sphx_glr_tutorials_phasorpy_phasor_from_lifetime.py` (``../tutorials/phasorpy_phasor_from_lifetime.py``) - - 00:00.451 + - 00:00.442 - 0.0 * - :ref:`sphx_glr_tutorials_phasorpy_components.py` (``../tutorials/phasorpy_components.py``) - - 00:00.355 + - 00:00.341 - 0.0 * - :ref:`sphx_glr_tutorials_misc_phasorpy_logo.py` (``../tutorials/misc/phasorpy_logo.py``) - - 00:00.048 + - 00:00.049 - 0.0 diff --git a/main/_sources/tutorials/benchmarks/phasorpy_phasor_from_signal.rst.txt b/main/_sources/tutorials/benchmarks/phasorpy_phasor_from_signal.rst.txt index b953fb62..c73c3d6c 100644 --- a/main/_sources/tutorials/benchmarks/phasorpy_phasor_from_signal.rst.txt +++ b/main/_sources/tutorials/benchmarks/phasorpy_phasor_from_signal.rst.txt @@ -147,36 +147,36 @@ and number of threads: harmonics 1 axis -1 - phasor_from_signal 0.055s 1.00 - threads 2 0.031s 0.57 - phasor_from_signal_fft 0.426s 7.79 - scipy_fft 0.434s 7.94 + phasor_from_signal 0.054s 1.00 + threads 2 0.032s 0.58 + phasor_from_signal_fft 0.412s 7.59 + scipy_fft 0.422s 7.76 axis 0 - phasor_from_signal 0.164s 3.00 - threads 2 0.080s 1.47 - phasor_from_signal_fft 0.684s 12.51 - scipy_fft 0.477s 8.73 + phasor_from_signal 0.164s 3.01 + threads 2 0.081s 1.48 + phasor_from_signal_fft 0.700s 12.88 + scipy_fft 0.525s 9.67 axis 2 - phasor_from_signal 0.054s 0.99 - threads 2 0.031s 0.57 - phasor_from_signal_fft 0.455s 8.33 - scipy_fft 0.398s 7.29 + phasor_from_signal 0.054s 1.00 + threads 2 0.032s 0.58 + phasor_from_signal_fft 0.410s 7.55 + scipy_fft 0.424s 7.79 harmonics 8 axis -1 - phasor_from_signal 0.436s 7.99 - threads 2 0.247s 4.53 - phasor_from_signal_fft 0.414s 7.58 - scipy_fft 0.410s 7.50 + phasor_from_signal 0.437s 8.04 + threads 2 0.244s 4.50 + phasor_from_signal_fft 0.432s 7.96 + scipy_fft 0.441s 8.11 axis 0 - phasor_from_signal 1.335s 24.43 - threads 2 0.655s 11.98 - phasor_from_signal_fft 0.687s 12.58 - scipy_fft 0.504s 9.21 + phasor_from_signal 1.310s 24.11 + threads 2 0.660s 12.14 + phasor_from_signal_fft 0.705s 12.97 + scipy_fft 0.503s 9.26 axis 2 - phasor_from_signal 0.436s 7.98 - threads 2 0.246s 4.49 - phasor_from_signal_fft 0.413s 7.55 - scipy_fft 0.409s 7.48 + phasor_from_signal 0.437s 8.05 + threads 2 0.252s 4.63 + phasor_from_signal_fft 0.429s 7.89 + scipy_fft 0.442s 8.13 @@ -255,7 +255,7 @@ when computing large number of harmonics with an optimized FFT function. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 10.761 seconds) + **Total running time of the script:** (0 minutes 9.970 seconds) .. _sphx_glr_download_tutorials_benchmarks_phasorpy_phasor_from_signal.py: diff --git a/main/_sources/tutorials/benchmarks/sg_execution_times.rst.txt b/main/_sources/tutorials/benchmarks/sg_execution_times.rst.txt index 85c61956..ca1eb080 100644 --- a/main/_sources/tutorials/benchmarks/sg_execution_times.rst.txt +++ b/main/_sources/tutorials/benchmarks/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:10.762** total execution time for 1 file **from tutorials/benchmarks**: +**00:09.970** total execution time for 1 file **from tutorials/benchmarks**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_tutorials_benchmarks_phasorpy_phasor_from_signal.py` (``phasorpy_phasor_from_signal.py``) - - 00:10.762 + - 00:09.970 - 0.0 diff --git a/main/_sources/tutorials/misc/phasorpy_logo.rst.txt b/main/_sources/tutorials/misc/phasorpy_logo.rst.txt index c401b415..849e98d8 100644 --- a/main/_sources/tutorials/misc/phasorpy_logo.rst.txt +++ b/main/_sources/tutorials/misc/phasorpy_logo.rst.txt @@ -60,7 +60,7 @@ Create the PhasorPy logo using the PhasorPy library. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.048 seconds) + **Total running time of the script:** (0 minutes 0.049 seconds) .. _sphx_glr_download_tutorials_misc_phasorpy_logo.py: diff --git a/main/_sources/tutorials/misc/sg_execution_times.rst.txt b/main/_sources/tutorials/misc/sg_execution_times.rst.txt index a60e1f49..9166587c 100644 --- a/main/_sources/tutorials/misc/sg_execution_times.rst.txt +++ b/main/_sources/tutorials/misc/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:00.048** total execution time for 1 file **from tutorials/misc**: +**00:00.049** total execution time for 1 file **from tutorials/misc**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_tutorials_misc_phasorpy_logo.py` (``phasorpy_logo.py``) - - 00:00.048 + - 00:00.049 - 0.0 diff --git a/main/_sources/tutorials/phasorpy_components.rst.txt b/main/_sources/tutorials/phasorpy_components.rst.txt index 3a2b5d97..206e5c9e 100644 --- a/main/_sources/tutorials/phasorpy_components.rst.txt +++ b/main/_sources/tutorials/phasorpy_components.rst.txt @@ -27,7 +27,7 @@ An introduction to component analysis in the phasor space. Import required modules, functions, and classes: -.. GENERATED FROM PYTHON SOURCE LINES 11-19 +.. GENERATED FROM PYTHON SOURCE LINES 11-21 .. code-block:: Python @@ -39,6 +39,7 @@ Import required modules, functions, and classes: from phasorpy.phasor import phasor_from_lifetime from phasorpy.plot import PhasorPlot + numpy.random.seed(42) @@ -46,7 +47,8 @@ Import required modules, functions, and classes: -.. GENERATED FROM PYTHON SOURCE LINES 20-27 + +.. GENERATED FROM PYTHON SOURCE LINES 22-29 Fractions of combination of two components ------------------------------------------ @@ -56,7 +58,7 @@ the line between the two components. For example, a combination with 25% contribution of a component with lifetime 8.0 ns and 75% contribution of a second component with lifetime 1.0 ns at 80 MHz: -.. GENERATED FROM PYTHON SOURCE LINES 27-42 +.. GENERATED FROM PYTHON SOURCE LINES 29-44 .. code-block:: Python @@ -87,13 +89,13 @@ a second component with lifetime 1.0 ns at 80 MHz: -.. GENERATED FROM PYTHON SOURCE LINES 43-46 +.. GENERATED FROM PYTHON SOURCE LINES 45-48 If the location of both components is known, their contributions to the phasor point that lies on the line between the components can be calculated: -.. GENERATED FROM PYTHON SOURCE LINES 46-54 +.. GENERATED FROM PYTHON SOURCE LINES 48-56 .. code-block:: Python @@ -119,7 +121,7 @@ can be calculated: -.. GENERATED FROM PYTHON SOURCE LINES 55-60 +.. GENERATED FROM PYTHON SOURCE LINES 57-62 Contribution of two known components in multiple phasors -------------------------------------------------------- @@ -127,7 +129,7 @@ Contribution of two known components in multiple phasors Phasors can have different contributions of two components with known phasor coordinates: -.. GENERATED FROM PYTHON SOURCE LINES 60-72 +.. GENERATED FROM PYTHON SOURCE LINES 62-74 .. code-block:: Python @@ -155,13 +157,13 @@ phasor coordinates: -.. GENERATED FROM PYTHON SOURCE LINES 73-76 +.. GENERATED FROM PYTHON SOURCE LINES 75-78 If the phasor coordinates of two components contributing to multiple phasors are known, their fractional contributions to each phasor coordinate can be calculated and plotted as histograms: -.. GENERATED FROM PYTHON SOURCE LINES 76-103 +.. GENERATED FROM PYTHON SOURCE LINES 78-105 .. code-block:: Python @@ -204,14 +206,14 @@ can be calculated and plotted as histograms: -.. GENERATED FROM PYTHON SOURCE LINES 104-105 +.. GENERATED FROM PYTHON SOURCE LINES 106-107 sphinx_gallery_thumbnail_number = 2 .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.355 seconds) + **Total running time of the script:** (0 minutes 0.341 seconds) .. _sphx_glr_download_tutorials_phasorpy_components.py: diff --git a/main/_sources/tutorials/phasorpy_fret.rst.txt b/main/_sources/tutorials/phasorpy_fret.rst.txt index 5453796f..08e47a3d 100644 --- a/main/_sources/tutorials/phasorpy_fret.rst.txt +++ b/main/_sources/tutorials/phasorpy_fret.rst.txt @@ -407,7 +407,7 @@ mypy: disable-error-code="arg-type" .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.698 seconds) + **Total running time of the script:** (0 minutes 1.670 seconds) .. _sphx_glr_download_tutorials_phasorpy_fret.py: diff --git a/main/_sources/tutorials/phasorpy_introduction.rst.txt b/main/_sources/tutorials/phasorpy_introduction.rst.txt index ca894106..70dd5e61 100644 --- a/main/_sources/tutorials/phasorpy_introduction.rst.txt +++ b/main/_sources/tutorials/phasorpy_introduction.rst.txt @@ -424,12 +424,12 @@ Print information about Python interpreter and installed packages: Python-3.11.9 phasorpy-0.1.dev numpy-2.0.0 - tifffile-2024.6.18 + tifffile-2024.7.2 imagecodecs-n/a lfdfiles-2024.5.24 sdtfile-2024.5.24 ptufile-2024.5.24 - matplotlib-3.9.0 + matplotlib-3.9.1 scipy-1.14.0 skimage-0.24.0 sklearn-n/a @@ -448,7 +448,7 @@ sphinx_gallery_thumbnail_number = 3 .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 8.703 seconds) + **Total running time of the script:** (0 minutes 13.430 seconds) .. _sphx_glr_download_tutorials_phasorpy_introduction.py: diff --git a/main/_sources/tutorials/phasorpy_phasor_from_lifetime.rst.txt b/main/_sources/tutorials/phasorpy_phasor_from_lifetime.rst.txt index 15548b2f..69b63fe7 100644 --- a/main/_sources/tutorials/phasorpy_phasor_from_lifetime.rst.txt +++ b/main/_sources/tutorials/phasorpy_phasor_from_lifetime.rst.txt @@ -42,7 +42,7 @@ Import required modules and functions: from phasorpy.phasor import phasor_from_lifetime, phasor_to_polar from phasorpy.plot import PhasorPlot, plot_phasor, plot_polar_frequency - rng = numpy.random.default_rng() + rng = numpy.random.default_rng(42) @@ -358,7 +358,7 @@ sphinx_gallery_thumbnail_number = -2 .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.451 seconds) + **Total running time of the script:** (0 minutes 0.442 seconds) .. _sphx_glr_download_tutorials_phasorpy_phasor_from_lifetime.py: diff --git a/main/_sources/tutorials/phasorpy_phasorplot.rst.txt b/main/_sources/tutorials/phasorpy_phasorplot.rst.txt index 5a5625ac..ad47c0b7 100644 --- a/main/_sources/tutorials/phasorpy_phasorplot.rst.txt +++ b/main/_sources/tutorials/phasorpy_phasorplot.rst.txt @@ -32,7 +32,7 @@ polar cursors, component mixture indicators, and manual annotations. Import required modules, functions, and classes: -.. GENERATED FROM PYTHON SOURCE LINES 16-23 +.. GENERATED FROM PYTHON SOURCE LINES 16-25 .. code-block:: Python @@ -43,6 +43,7 @@ Import required modules, functions, and classes: from phasorpy.plot import PhasorPlot + numpy.random.seed(42) @@ -50,7 +51,8 @@ Import required modules, functions, and classes: -.. GENERATED FROM PYTHON SOURCE LINES 24-29 + +.. GENERATED FROM PYTHON SOURCE LINES 26-31 Empty phasor plot ----------------- @@ -58,7 +60,7 @@ Empty phasor plot Create an empty phasor plot, showing the first quadrant and the universal semicircle: -.. GENERATED FROM PYTHON SOURCE LINES 29-33 +.. GENERATED FROM PYTHON SOURCE LINES 31-35 .. code-block:: Python @@ -78,7 +80,7 @@ universal semicircle: -.. GENERATED FROM PYTHON SOURCE LINES 34-39 +.. GENERATED FROM PYTHON SOURCE LINES 36-41 Universal semicircle -------------------- @@ -86,7 +88,7 @@ Universal semicircle Create a phasor plot at a frequency of 80 MHz and custom axis limits. Add a second, transformed universal semicircle: -.. GENERATED FROM PYTHON SOURCE LINES 39-44 +.. GENERATED FROM PYTHON SOURCE LINES 41-46 .. code-block:: Python @@ -107,14 +109,14 @@ Add a second, transformed universal semicircle: -.. GENERATED FROM PYTHON SOURCE LINES 45-49 +.. GENERATED FROM PYTHON SOURCE LINES 47-51 Scatter and line plots ---------------------- Plot phasor coordinates as scatter and/or lines: -.. GENERATED FROM PYTHON SOURCE LINES 49-57 +.. GENERATED FROM PYTHON SOURCE LINES 51-58 .. code-block:: Python @@ -128,7 +130,6 @@ Plot phasor coordinates as scatter and/or lines: - .. image-sg:: /tutorials/images/sphx_glr_phasorpy_phasorplot_003.png :alt: Scatter and line plots :srcset: /tutorials/images/sphx_glr_phasorpy_phasorplot_003.png @@ -138,7 +139,7 @@ Plot phasor coordinates as scatter and/or lines: -.. GENERATED FROM PYTHON SOURCE LINES 58-63 +.. GENERATED FROM PYTHON SOURCE LINES 59-64 Cursors ------- @@ -146,7 +147,7 @@ Cursors Point out certain polar coordinates, and ranges thereof, using phasor coordinates: -.. GENERATED FROM PYTHON SOURCE LINES 63-70 +.. GENERATED FROM PYTHON SOURCE LINES 64-71 .. code-block:: Python @@ -169,11 +170,11 @@ using phasor coordinates: -.. GENERATED FROM PYTHON SOURCE LINES 71-72 +.. GENERATED FROM PYTHON SOURCE LINES 72-73 Alternatively, use polar coordinates: -.. GENERATED FROM PYTHON SOURCE LINES 72-79 +.. GENERATED FROM PYTHON SOURCE LINES 73-80 .. code-block:: Python @@ -196,14 +197,14 @@ Alternatively, use polar coordinates: -.. GENERATED FROM PYTHON SOURCE LINES 80-84 +.. GENERATED FROM PYTHON SOURCE LINES 81-85 Component mixtures ------------------ Show linear combinations of phasor coordinates or ranges thereof: -.. GENERATED FROM PYTHON SOURCE LINES 84-94 +.. GENERATED FROM PYTHON SOURCE LINES 85-95 .. code-block:: Python @@ -229,14 +230,14 @@ Show linear combinations of phasor coordinates or ranges thereof: -.. GENERATED FROM PYTHON SOURCE LINES 95-99 +.. GENERATED FROM PYTHON SOURCE LINES 96-100 2D Histogram ------------ Plot large number of phasor coordinates as a 2D histogram: -.. GENERATED FROM PYTHON SOURCE LINES 99-107 +.. GENERATED FROM PYTHON SOURCE LINES 100-108 .. code-block:: Python @@ -260,14 +261,14 @@ Plot large number of phasor coordinates as a 2D histogram: -.. GENERATED FROM PYTHON SOURCE LINES 108-112 +.. GENERATED FROM PYTHON SOURCE LINES 109-113 Contours -------- Plot the contours of the density of phasor coordinates: -.. GENERATED FROM PYTHON SOURCE LINES 112-118 +.. GENERATED FROM PYTHON SOURCE LINES 113-118 .. code-block:: Python @@ -279,7 +280,6 @@ Plot the contours of the density of phasor coordinates: - .. image-sg:: /tutorials/images/sphx_glr_phasorpy_phasorplot_008.png :alt: Contours :srcset: /tutorials/images/sphx_glr_phasorpy_phasorplot_008.png @@ -394,7 +394,7 @@ The PhasorPlot class can use an existing matlotlib axes. The `PhasorPlot.ax` attribute provides access to the underlying matplotlib axes, for example, to add annotations: -.. GENERATED FROM PYTHON SOURCE LINES 167-182 +.. GENERATED FROM PYTHON SOURCE LINES 167-181 .. code-block:: Python @@ -415,7 +415,6 @@ matplotlib axes, for example, to add annotations: - .. image-sg:: /tutorials/images/sphx_glr_phasorpy_phasorplot_012.png :alt: Matplotlib axes :srcset: /tutorials/images/sphx_glr_phasorpy_phasorplot_012.png @@ -425,7 +424,7 @@ matplotlib axes, for example, to add annotations: -.. GENERATED FROM PYTHON SOURCE LINES 183-188 +.. GENERATED FROM PYTHON SOURCE LINES 182-187 plot_phasor function -------------------- @@ -433,7 +432,7 @@ plot_phasor function The :py:func:`phasorpy.plot.plot_phasor` function provides a simpler alternative to plot phasor coordinates in a single statement: -.. GENERATED FROM PYTHON SOURCE LINES 188-193 +.. GENERATED FROM PYTHON SOURCE LINES 187-192 .. code-block:: Python @@ -454,14 +453,14 @@ alternative to plot phasor coordinates in a single statement: -.. GENERATED FROM PYTHON SOURCE LINES 194-195 +.. GENERATED FROM PYTHON SOURCE LINES 193-194 sphinx_gallery_thumbnail_number = 10 .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.680 seconds) + **Total running time of the script:** (0 minutes 0.663 seconds) .. _sphx_glr_download_tutorials_phasorpy_phasorplot.py: diff --git a/main/_sources/tutorials/sg_execution_times.rst.txt b/main/_sources/tutorials/sg_execution_times.rst.txt index a17c3b38..45d791ae 100644 --- a/main/_sources/tutorials/sg_execution_times.rst.txt +++ b/main/_sources/tutorials/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:11.887** total execution time for 5 files **from tutorials**: +**00:16.546** total execution time for 5 files **from tutorials**: .. container:: @@ -33,17 +33,17 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_tutorials_phasorpy_introduction.py` (``phasorpy_introduction.py``) - - 00:08.703 + - 00:13.430 - 0.0 * - :ref:`sphx_glr_tutorials_phasorpy_fret.py` (``phasorpy_fret.py``) - - 00:01.698 + - 00:01.670 - 0.0 * - :ref:`sphx_glr_tutorials_phasorpy_phasorplot.py` (``phasorpy_phasorplot.py``) - - 00:00.680 + - 00:00.663 - 0.0 * - :ref:`sphx_glr_tutorials_phasorpy_phasor_from_lifetime.py` (``phasorpy_phasor_from_lifetime.py``) - - 00:00.451 + - 00:00.442 - 0.0 * - :ref:`sphx_glr_tutorials_phasorpy_components.py` (``phasorpy_components.py``) - - 00:00.355 + - 00:00.341 - 0.0 diff --git a/main/searchindex.js b/main/searchindex.js index 8b9510b8..d3d37ce7 100644 --- a/main/searchindex.js +++ b/main/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"0.1 (2024.x.x)": [[16, "x-x"]], "1. Correction": [[11, "correction"]], "2. Warning": [[11, "warning"]], "2D Histogram": [[29, "d-histogram"]], "3. Temporary Ban": [[11, "temporary-ban"]], "4. Permanent Ban": [[11, "permanent-ban"]], "API reference": [[5, "api-reference"]], "Acknowledgments": [[0, "acknowledgments"]], "All quadrants": [[29, "all-quadrants"]], "Appendix": [[27, "appendix"]], "Articles": [[15, "articles"]], "Ask for help": [[12, "ask-for-help"]], "Attribution": [[11, "attribution"]], "Average of lifetime distributions": [[28, "average-of-lifetime-distributions"]], "Background fluorescence": [[26, "background-fluorescence"]], "Benchmark phasor_from_signal": [[19, "benchmark-phasor-from-signal"]], "Benchmarks": [[18, "benchmarks"], [21, "benchmarks"]], "Calculate phasor coordinates": [[27, "calculate-phasor-coordinates"]], "Calibrate phasor coordinates": [[27, "calibrate-phasor-coordinates"]], "Code of conduct": [[11, "code-of-conduct"]], "Code standards": [[12, "code-standards"]], "Combined plots": [[29, "combined-plots"]], "Command line interface": [[1, "command-line-interface"]], "Commit the changes": [[12, "commit-the-changes"]], "Component analysis": [[25, "component-analysis"]], "Component mixtures": [[29, "component-mixtures"]], "Computation times": [[17, "computation-times"], [20, "computation-times"], [24, "computation-times"], [30, "computation-times"]], "Conclusions": [[19, "conclusions"]], "Contents": [[13, "contents"]], "Contours": [[29, "contours"]], "Contribute code or documentation": [[12, "contribute-code-or-documentation"]], "Contributing": [[12, "contributing"]], "Contribution of two known components in multiple phasors": [[25, "contribution-of-two-known-components-in-multiple-phasors"]], "Contributors": [[0, "contributors"]], "Create a branch": [[12, "create-a-branch"]], "Create a development environment": [[12, "create-a-development-environment"]], "Create a pull request": [[12, "create-a-pull-request"]], "Cursors": [[29, "cursors"]], "Documentation": [[12, "documentation"]], "Donor bleedthrough": [[26, "donor-bleedthrough"]], "Empty phasor plot": [[29, "empty-phasor-plot"]], "Enforcement": [[11, "enforcement"]], "Enforcement Guidelines": [[11, "enforcement-guidelines"]], "Enforcement Responsibilities": [[11, "enforcement-responsibilities"]], "FRET efficiency": [[28, "fret-efficiency"]], "FRET efficiency trajectories": [[26, "fret-efficiency-trajectories"]], "Filter phasor coordinates": [[27, "filter-phasor-coordinates"]], "Fork the repository": [[12, "fork-the-repository"]], "Fractions not FRETing": [[26, "fractions-not-freting"]], "Fractions of combination of two components": [[25, "fractions-of-combination-of-two-components"]], "F\u00f6rster Resonance Energy Transfer": [[26, "forster-resonance-energy-transfer"]], "Image": [[29, "image"]], "Import phasorpy": [[27, "import-phasorpy"]], "Indices and tables": [[13, "indices-and-tables"]], "Install PhasorPy": [[27, "install-phasorpy"]], "Install Python": [[27, "install-python"]], "Interactive plot": [[26, "interactive-plot"]], "Introduction to PhasorPy": [[27, "introduction-to-phasorpy"]], "Lifetime distributions at multiple frequencies": [[28, 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Computation times#

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