add display name

pinellolab · Aug 21, 2023 · 2530985 · 2530985
1 parent 26e2009
commit 2530985
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/bin/bean-qc b/bin/bean-qc
@@ -107,7 +107,9 @@ def parse_args():
 
 def main():
     args = parse_args()
-    os.system("python3 -m ipykernel install --user --name bean_python3")
+    os.system(
+        "python -m ipykernel install --user --name bean_python3 --display-name bean_python3"
+    )
     pm.execute_notebook(
         f"{os.path.dirname(be.__file__)}/../notebooks/sample_quality_report.ipynb",
         f"{args.out_report_prefix}.ipynb",

diff --git a/bin/bean-run b/bin/bean-run
@@ -63,9 +63,7 @@ def run_inference(
         optim=pyro.optim.ClippedAdam({"lr": initial_lr, "lrd": lrd}),
         loss=pyro.infer.Trace_ELBO(),
     )
-
     losses = []
-
     try:
         for t in tqdm(range(num_steps)):
             loss = svi.step(data)