fix run and semimatch being overrided in excel output

pinellolab · Nov 28, 2023 · ae97555 · ae97555
1 parent 95cb0ee
commit ae97555
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Showing 2 changed files with 1 addition and 14 deletions.
diff --git a/bean/mapping/GuideEditCounter.py b/bean/mapping/GuideEditCounter.py
@@ -490,7 +490,7 @@ def _count_reporter_edits(
             )
 
     def _get_guide_counts_bcmatch_semimatch(
-        self, bcmatch_layer="X_bcmatch", semimatch_layer="X"
+        self, bcmatch_layer="X_bcmatch", semimatch_layer="X_semimatch"
     ):
         self.screen.layers[semimatch_layer] = np.zeros_like((self.screen.X))
         R1_iter, R2_iter = self._get_fastq_iterators(

diff --git a/bin/bean-run b/bin/bean-run
@@ -59,19 +59,6 @@ warnings.filterwarnings(
 )
 
 
-DATACLASS_DICT = {
-    "Normal": VariantSortingScreenData,
-    "MixtureNormal": VariantSortingReporterScreenData,
-    "_MixtureNormal+Acc": VariantSortingReporterScreenData,  # TODO: old
-    "MixtureNormal+Acc": VariantSortingReporterScreenData,
-    "MixtureNormalConstPi": VariantSortingScreenData,
-    "MultiMixtureNormal": TilingSortingReporterScreenData,
-    "MultiMixtureNormal+Acc": TilingSortingReporterScreenData,
-}
-
-
-
-
 def main(args, bdata):
     if args.cuda:
         os.environ["CUDA_VISIBLE_DEVICES"] = "1"