From d28dfd6d313417c3465adaff1046a3e6e25e9545 Mon Sep 17 00:00:00 2001 From: Jayoung Kim Ryu Date: Tue, 26 Sep 2023 17:27:34 -0400 Subject: [PATCH] Add example input metadata --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index ab62aba..afb76b4 100644 --- a/README.md +++ b/README.md @@ -58,7 +58,7 @@ bean-count-samples \ ### Input file format #### 1. gRNA_library.csv -File should contain following columns. +File should contain following columns. Also see [example](crispr-bean/tests/test_guide_info.csv). * `name`: gRNA ID column * `sequence`: gRNA sequence * `barcode`: R2 barcode to help match reporter to gRNA @@ -86,7 +86,7 @@ File should contain following columns with header. * `upper_quantile [Optional]`: FACS sorting upper quantile * `lower_quantile [Optional]`: FACS sorting lower quantile -Optional columns are not required but can be provided for compatibility with `bean-qc` and `bean-run`. +Optional columns are not required but can be provided for compatibility with `bean-qc` and `bean-run`. See [example](tests/data/sample_list.csv). ### Output file format `count` or `count-samples` produces `.h5ad` and `.xlsx` file with guide and per-guide allele counts.