Consistent namespace for placed markers datasets

[rsuchecki]

Currently:

pretzel-input-generator/main.nf

Lines 179 to 189 in d852b3f

	paf2pretzel.groovy \
	--paf ${paf} \
	--parent ${genome} \
	--sequence-type ${meta.seqs.seqtype} \
	--base-name ${tag} \
	--short-name ${meta.seqs.name} \
	--align-tool ${meta.align.tool} \
	--align-params "${meta.align.params}" \
	--allowed-target-id-pattern '${meta.ref.allowedIdPattern}' \
	--output ${tag}_${meta.seqs.seqtype}.json.gz \
	--out-counts ${tag}_${meta.seqs.seqtype}.counts

pretzel-input-generator/bin/paf2pretzel.groovy

Line 86 in d852b3f

annotation.namespace = basename

Related to #29