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celseq2_bc384-v2.csv
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celseq2_bc384-v2.csv
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## comments in this file are ignored
## two columns (space or tab-delimited) specify the barcode id and the bardcode itself
## a lower case letter in the barcode means: this letter must *always* be exact.
## This can be used if some barcodes are not different enough from the other
## to allow a fixed number of mismatches.
## In the current file, there is a one nucleotide difference between the following barcodes:
##
## c182 CAGATAcC <-> c217 CAGATAgC
## c133 CAGTGaCA <-> c336 CAGTGtCA
## c106 CATcTCAC <-> c203 CATgTCAC
## c127 GGcGATTT <-> c306 GGgGATTT
##
## In order to allow a 1-mismatch 'demultiplexing', these nucleotides have therefore been lowercased.
## (this is still not enough; see version 3 for version that is safe to use with 1 mismatch).
##
## Philip Lijnzaad, 18okt2016
c1 CGTCTAAT
c2 AGACTCGT
c3 GCACGTCA
c4 TCAACGAC
c5 ATTTAGCG
c6 ATACAGAC
c7 TGCGTAGG
c8 TGGAGCTC
c9 TGAATACC
c10 TCTCACAC
c11 TACTGGTA
c12 ACGATAGG
c13 GATGTCGA
c14 TTACGGGT
c15 CACAGCAT
c16 CTTTGACA
c17 CCTTCAAG
c18 GAGTCCTG
c19 CACACTGA
c20 GTTACAGG
c21 GGACCTTT
c22 TTCCGTTC
c23 ACTGTTTG
c24 AAGTGGCT
c25 CTGTACAA
c26 CGCAAAGT
c27 GTGCATGA
c28 GTCATTAG
c29 AGCTCCTT
c30 TCACCCGA
c31 GTTGCCAC
c32 TGTACCAA
c33 AACGAGGT
c34 AGCCACCA
c35 GGTAATCA
c36 CCAGTCCA
c37 ACCTCAGC
c38 GGTGGACT
c39 GACAAACC
c40 TAACTCCG
c41 ACACCGTG
c42 GTAGAACG
c43 GGATTGAC
c44 ACGTATCC
c45 TTCGGAAA
c46 AGTTGTGT
c47 AAGCACAT
c48 CTGTCATT
c49 GTCCTATA
c50 CTACGCTG
c51 GGGATTGT
c52 TGATGTAG
c53 TTCGCTGT
c54 GAAGACTT
c55 TCTGGGCA
c56 CAACTAGA
c57 CCATGGGA
c58 ATGCGACG
c59 GAGGGTAG
c60 CGGGTGAA
c61 GCCATCTT
c62 GCATAATC
c63 TCTATGGT
c64 AGGACTTA
c65 CGTGATTC
c66 ACTAGCGA
c67 GTAACTCC
c68 CGGAAGTG
c69 CCGAGTAC
c70 GACGCAAT
c71 ACCTGGAG
c72 CATGGGTT
c73 ATTCCTAG
c74 AATCATGC
c75 GCTTCCCT
c76 AGGTAAAG
c77 CCACAACT
c78 ACAGGCAT
c79 TTTGTGTC
c80 TGAGCATA
c81 TTAGACGC
c82 CGCTTGCT
c83 AGTCTGCC
c84 CATAGTCG
c85 TCTTGCTG
c86 GGGACAAC
c87 ATATTCCC
c88 TGTTAAGC
c89 TACGCCTC
c90 CACTTATC
c91 ACCGCTAA
c92 TAAGGTCC
c93 GAAAGGTG
c94 ACGTTGTA
c95 GCAGAGAA
c96 GCATTTGG
c97 TAGTGTGC
c98 TACAAGGG
c99 GGACTACT
c100 TCCCTAGA
c101 ATGAGCAG
c102 TACTGCTG
c103 CTGACTGT
c104 CAGCGATT
c105 GTTCGCTA
c106 CATcTCAC
c107 TCTGCCTA
c108 CTGGCTAA
c109 GATTGCTC
c110 GGGTTATG
c111 CTTCGTAC
c112 GAAACTGC
c113 TACCAGAC
c114 TTGCAACC
c115 TTAGGACG
c116 TATCCACG
c117 TCTAGAGG
c118 CAGATCGT
c119 ATGTGCGT
c120 AAGTCTCG
c121 CTAGCAAC
c122 TTCCTACC
c123 TCCTAGCT
c124 GGTTCTGA
c125 ACGTACTG
c126 GTGAACTC
c127 GGcGATTT
c128 AATCGGCA
c129 GCGTATAG
c130 CCGATTCT
c131 CTATAGGC
c132 CTTGTGCA
c133 CAGTGaCA
c134 ACGCTCTT
c135 ATAGGAGC
c136 GTTCTGCT
c137 TAGACGCT
c138 CGTATCAG
c139 TTGTTCCG
c140 TAGGTCAC
c141 ATACACGG
c142 CGAGAATG
c143 CGCTATAG
c144 GTATCGCT
c145 CGGTGTTT
c146 CAAGGTGT
c147 AGAACCAC
c148 AAGCTGCA
c149 ACGGATGT
c150 AGTGGGAT
c151 AGGGACAA
c152 GTGTAACC
c153 CAAGAGAC
c154 GTCCGTAA
c155 TGGTTGTC
c156 AGGCATCT
c157 GTCTACCT
c158 GTTCAGTG
c159 GCCACAAA
c160 GAGAACGA
c161 GCTGTAAC
c162 TCAGCTTG
c163 TTCCCTCA
c164 TCGACTCA
c165 GTGATGTC
c166 ATCGGTTG
c167 CCATTTCC
c168 CTGAAGGA
c169 GAGTCTGT
c170 TCGCCATT
c171 CGGTAATC
c172 CCTGACAA
c173 AAGACAGC
c174 TGCGGTAT
c175 TATCTCGC
c176 TTCACGTG
c177 CCCCTATT
c178 TATCCTGC
c179 CCTTCGTA
c180 CAAAGTGG
c181 GTCTCACA
c182 CAGATAcC
c183 CCTACACA
c184 AGCAGAAC
c185 TTTGAGGG
c186 AAACAGGC
c187 TGATCCTC
c188 GAGAAGAG
c189 CGTAATCG
c190 CGAATGCA
c191 TGAAAGCG
c192 CGTAGAAG
c193 CCAGAAAG
c194 CTTACGAC
c195 CCGCATTT
c196 ACGATCCT
c197 AGGATGGA
c198 TCGGTTGA
c199 TCTGTGAG
c200 ACCACGAT
c201 GGCTCTAT
c202 TACTGCAC
c203 CATgTCAC
c204 AAGGAGCA
c205 AACCGCTT
c206 CAACCATG
c207 AGAACAGG
c208 TAAGCCGT
c209 GATGCTCT
c210 CTAGTTCC
c211 GATCACCT
c212 GATCGAAG
c213 GCTTCTTC
c214 TGGTGAGT
c215 CACTATCC
c216 GTAATCCG
c217 CAGATAgC
c218 CCGTCTAA
c219 TACCTGTC
c220 TATTCGGG
c221 GTTGGTGA
c222 TAGCTACC
c223 GACTTGAG
c224 TTCAGCGT
c225 ACAGAAGC
c226 ACGCGTAA
c227 CATAGCTC
c228 ACCCATCT
c229 GCAATCGA
c230 TCCAATCG
c231 TTCTCGGA
c232 TATGACCC
c233 TTCAGACC
c234 GAGAGAGA
c235 ATGCTCTG
c236 TGACCAAG
c237 GAGCAAAC
c238 GTCGATCT
c239 CTCTTTGC
c240 AAGGTCAG
c241 ATGCCTCA
c242 TCCGAACA
c243 CTGCGAAA
c244 TGGGTTTC
c245 CAGTCCAT
c246 CGACTTAC
c247 TCGGAATC
c248 CAGCTTTG
c249 TGGTAGCT
c250 TTATCCGG
c251 GCATCAGT
c252 CAATACGC
c253 TAGGGGAA
c254 GCTTTGGA
c255 TCAGCACT
c256 TGCGTGAT
c257 GTAGTGAG
c258 GTGGTGTA
c259 TCATGAGG
c260 TCCAGCTA
c261 GGATGATG
c262 AGCACTCT
c263 AAGCGAGT
c264 TGATCTCC
c265 ACAGAGCT
c266 ATAGCTGC
c267 TGATTCGC
c268 ATCGTGCA
c269 AGTCAGGA
c270 TTTTCGCC
c271 AGGAGACT
c272 GTTCCGAT
c273 TCGCGATA
c274 GGACGAAT
c275 TCGACAAG
c276 GAACAGCA
c277 GTCCAAAG
c278 CTGCTTCT
c279 ACCCTACA
c280 TCGTCCTT
c281 GCTAATGG
c282 GGAGTACA
c283 CGGTACTT
c284 AACACGCA
c285 GCAAGAAG
c286 CATGCACA
c287 GTTCTTGC
c288 AGCGAACT
c289 GTGTTCAG
c290 TCTCGTCT
c291 TACGGTGA
c292 GATGTACC
c293 TACCACGA
c294 TCTGGTTC
c295 CCTCTCAA
c296 GTATGCAC
c297 GGAGCTAA
c298 ACCCCATT
c299 AGTTCTCG
c300 ACCAAGGA
c301 GTGCGTAT
c302 AGTACGTG
c303 AGAGGTGA
c304 GGGAAGAT
c305 CCAACGTT
c306 GGgGATTT
c307 GGCAACAA
c308 CAGTCAGA
c309 CGAAAGCT
c310 AATGGTGG
c311 TGGCACAA
c312 ATGGGCTT
c313 TGATCGGT
c314 CTGATCAC
c315 CTCGTACT
c316 CTACCGTA
c317 TTGTCCAC
c318 ATTGGACC
c319 TGAAAGGC
c320 ACATGTGC
c321 CGATCCTA
c322 ATGGCACT
c323 TAGAGGGT
c324 GTATCGTC
c325 CACCATGT
c326 TAGGAACG
c327 TGATGCCA
c328 GAGTTGGT
c329 TGAGAGAG
c330 CCTGTAGA
c331 GGTGTTAG
c332 GTCTTACC
c333 AGACAACC
c334 TGGCTTCA
c335 AGCTTCAC
c336 CAGTGtCA
c337 GTTATGCC
c338 CGAACTGT
c339 GATCCTGA
c340 CCAGATGA
c341 AACCTGCT
c342 TATGGAGC
c343 CACTCACT
c344 GGGTAAGA
c345 CAAACGAG
c346 AAAGGCTG
c347 ACAAGGCA
c348 AGTTTCGG
c349 ACCAGTTC
c350 AATAGGGC
c351 AACCCAAC
c352 CGCATAAC
c353 GTGCTAGT
c354 GGTGACTA
c355 GGTTAGTG
c356 CGAAGCAA
c357 CCGAGATT
c358 CTCTGCTA
c359 TAGTTGCG
c360 AGGCTAAC
c361 ACAAACCG
c362 ATCGACGA
c363 CTCATGTC
c364 CCCTAGTA
c365 CCTTTGAC
c366 TGTGGCTT
c367 GCGATATC
c368 ACGAACAC
c369 TTGATGGC
c370 AACATGGG
c371 CTTAGCCT
c372 AAAGCGGA
c373 CAATGGTC
c374 AACCGGAA
c375 AACTCTGG
c376 TTAGGCAG
c377 CGTCGTTT
c378 CCTGCTAT
c379 CAGAGAAG
c380 GATTGTCC
c381 CACCTCTA
c382 AGTTGGAC
c383 AGTGCAGA
c384 CTCTGTCT