Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Mention Memory Requirements in README #70

Open
omerXfaruq opened this issue Apr 24, 2023 · 0 comments
Open

Mention Memory Requirements in README #70

omerXfaruq opened this issue Apr 24, 2023 · 0 comments

Comments

@omerXfaruq
Copy link

omerXfaruq commented Apr 24, 2023

Hello,

When I tried to run bifrost on reference genome FASTA file with 2-4 threads and kmer size 31, the process was getting killed after some time. After analyzing the memory usage I realized 18G of memory was not enough for it to run.

It would be nice to mention total amount of memory required for some tasks in README to give some sense of it.

Currently trying kmer size 15, will let you know if it works.

Edit:
As far as I can see kmer 15 uses 12GB of memory in this setup. From that we can assume
kmer 31 -> 24GB
kmer 63 -> 48GB

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant