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Update README.md
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pmelsted authored Mar 21, 2017
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Expand Up @@ -32,7 +32,7 @@ Pizzly requires the reference transcriptome in FASTA format as well as a GTF fil
We recommend using the [Ensembl](http://www.ensembl.org/index.html) transcriptomes.

The example below assumes you have your transcriptome in FASTA format as `index.fa.gz`, the GTF file `index.gtf.gz`
and your paired-end RNA-Seq data sets in `r1.fastq.g` and `r2.fastq.gz
and your paired-end RNA-Seq data sets in `r1.fastq.g` and `r2.fastq.gz`

### Running

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