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Fix critical bugs and integrate new features #184

Merged
merged 20 commits into from
Dec 12, 2023
Merged

Fix critical bugs and integrate new features #184

merged 20 commits into from
Dec 12, 2023

Commits on Nov 27, 2023

  1. Rework CLI argument parser and fix bug(s) that were included

    @khoffschlag
    khoffschlag committed Nov 27, 2023
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  2. Remove not needed file (we will not use slurm plugin on cluster)

    @khoffschlag
    khoffschlag committed Nov 27, 2023
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  3. Remove prints

    @khoffschlag
    khoffschlag committed Nov 27, 2023
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  4. Fix bug in add_argument statement for bbr

    @khoffschlag
    khoffschlag committed Nov 27, 2023
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  5. Save software versions

    @khoffschlag
    khoffschlag committed Nov 27, 2023
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Commits on Nov 29, 2023

  1. Add deepbet to requirements.txt

    @khoffschlag
    khoffschlag committed Nov 29, 2023
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  2. Be less strict with version numbers

    @khoffschlag
    khoffschlag committed Nov 29, 2023
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Commits on Dec 1, 2023

  1. Allow python versions greater than 3.9

    @khoffschlag
    khoffschlag committed Dec 1, 2023
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  2. Update dependencies in pyproject.toml

    @khoffschlag
    khoffschlag committed Dec 1, 2023
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  3. Delete apptainer-pipeline-executor

    @khoffschlag
    khoffschlag committed Dec 1, 2023
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  4. Delete run_pumi_docker and run_pumi_docker_nfs

    @khoffschlag
    khoffschlag committed Dec 1, 2023
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  5. Create parent folders for software_versions.txt if needed

    @khoffschlag
    khoffschlag committed Dec 1, 2023
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  6. Try scikit-learn 1.3.2

    @khoffschlag
    khoffschlag committed Dec 1, 2023
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  7. Adapt RPN model to scikit-learn version 1.3.2

    @khoffschlag
    khoffschlag committed Dec 1, 2023
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  8. Adapt allowed python versions (scikit-learn 1.3.2 needs python >=3.8 … 

    …but also works for newest python version)
    @khoffschlag
    khoffschlag committed Dec 1, 2023
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  9. Upload Dockerfile_v0.7

    @khoffschlag
    khoffschlag committed Dec 1, 2023
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  10. Rework save_software_versions method

    @khoffschlag
    khoffschlag committed Dec 1, 2023
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  11. Fix --help option not working

    @khoffschlag
    khoffschlag committed Dec 1, 2023
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Commits on Dec 8, 2023

  1. Upload cluster-pipeline-executor.sh

    @khoffschlag
    khoffschlag committed Dec 8, 2023
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  2. Add missing scripts to pyproject.toml

    @khoffschlag
    khoffschlag committed Dec 8, 2023
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