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Running RAMPART

With this set up, to run RAMPART:

rampart --protocol path/to/realtime-polio/rampart

where path/to/realtime-polio/rampart will change depending on each machine and where you have saved the realtime-polio directory.

If you navigate to realtime-polio/rampart in your computer, then type

pwd

this will tell you the path to the directory. Copy and paste this into your terminal when you're running RAMPART.

Note: This command will not change in between runs. Once you know what your path is, you can use the same command every time. For instance, on my machine, I type: rampart --protocol /Users/aine/repositories/realtime-polio/rampart. Yours will certainly be something similar. The difference in between runs is where you are when you type this command. You must be in the directory you have set up for the current MinION run.

Open a web browser to view http://localhost:3000

More information about RAMPART can be found here.

RAMPART command line options

usage: rampart [-h] [-v] [--verbose] [--ports PORTS PORTS]
               [--protocol PROTOCOL] [--title TITLE]
               [--basecalledPath BASECALLEDPATH]
               [--annotatedPath ANNOTATEDPATH]
               [--referencesPath REFERENCESPATH]
               [--referencesLabel REFERENCESLABEL]
               [--barcodeNames BARCODENAMES [BARCODENAMES ...]]
               [--annotationOptions ANNOTATIONOPTIONS [ANNOTATIONOPTIONS ...]]
               [--clearAnnotated] [--simulateRealTime SIMULATEREALTIME]
               [--devClient] [--mockFailures]

Stopping RAMPART

If you need to stop RAMPART, you can type Ctrl+c in the terminal window running RAMPART.