GitHub - polmonso/superannotator

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 120 Commits
extras		extras
icons		icons
plugins		plugins
third-party		third-party
.gitignore		.gitignore
.gitmodules		.gitmodules
ColorLists.h		ColorLists.h
CommonTypes.h		CommonTypes.h
FijiHelper.h		FijiHelper.h
Matrix3D.h		Matrix3D.h
MiscUtils.h		MiscUtils.h
PluginBase.h		PluginBase.h
PluginServices.cpp		PluginServices.cpp
PluginServices.h		PluginServices.h
Readme.text		Readme.text
Region3D.h		Region3D.h
RegionGrowing.h		RegionGrowing.h
ShapeStatistics.h		ShapeStatistics.h
SuperVoxeler.h		SuperVoxeler.h
TODO.txt		TODO.txt
annotatorwnd.cpp		annotatorwnd.cpp
annotatorwnd.h		annotatorwnd.h
annotatorwnd.ui		annotatorwnd.ui
brush.cpp		brush.cpp
brush.h		brush.h
customUserDefs.inc.default		customUserDefs.inc.default
main.cpp		main.cpp
mygraphicsview.cpp		mygraphicsview.cpp
mygraphicsview.h		mygraphicsview.h
overlay.cpp		overlay.cpp
overlay.h		overlay.h
preferencesdialog.cpp		preferencesdialog.cpp
preferencesdialog.h		preferencesdialog.h
preferencesdialog.ui		preferencesdialog.ui
qlabelimage.cpp		qlabelimage.cpp
qlabelimage.h		qlabelimage.h
regionlistframe.cpp		regionlistframe.cpp
regionlistframe.h		regionlistframe.h
regionlistframe.ui		regionlistframe.ui
superannotator.pro		superannotator.pro
synapseresamplerdialog.cpp		synapseresamplerdialog.cpp
synapseresamplerdialog.h		synapseresamplerdialog.h
synapseresamplerdialog.ui		synapseresamplerdialog.ui
textinfodialog.cpp		textinfodialog.cpp
textinfodialog.h		textinfodialog.h
textinfodialog.ui		textinfodialog.ui

Repository files navigation

How To Install
==============

checkout thirdparty libraries as well
 git clone --recursive https://[email protected]/polmonso/superannotator.git

Compile 

How To Use
==========

superannotator
--------------

plugins
-------

### Graph Cuts

The Graph Cuts plugin uses the overlay 1, with class 1 as seeds and class 2 as sinks. The output will be saved in overlay 4. You can save each overlay through the menu or vy selecting it in the Layers menu.

To switch between classes (aka labels) use the keyboard numbers. 

There's a video of the process here: https://documents.epfl.ch/groups/c/cv/cvlab-unit/public/plugins/superannotator2_hd.avi

Notice the change of class at the bottom righthand side corner which is performed using the keyboard numbers.

To transfer the overlay 4 to the overlay 2 press Control + T

To Hide/show overlay n use Control + n