_pkgdown.yml

templates:
  params:
    bootswatch: readable

navbar:
  title: "bigstatsr"
  left:
    - text: "Manual"
      href: reference/index.html
    - text: "Vignettes"
      menu:
      - text: "Video presentation of package bigstatsr"
        href: https://www.youtube.com/watch?v=UXKYqpAo6cs
      - text: "Exercise"
        href: https://privefl.github.io/bigsnpr/articles/exo.html
      - text: "Fitting penalized regressions"
        href: articles/penalized-regressions.html
      - text: "Packages bigstatsr and bigmemory"
        href: articles/bigstatsr-and-bigmemory.html
      - text: "Operations with scaling"
        href: articles/operations-with-scaling.html
      - text: "Read a FBM from a text file"
        href: articles/read-FBM-from-file.html
      - text: "Showcasing big_apply()"
        href: articles/big-apply.html
  right:
    - text: "About"
      icon: fa-user
      href: https://privefl.github.io/about.html
    - icon: fa-github fa
      href: https://github.com/privefl/bigstatsr
    - icon: fa-newspaper-o fa
      href: news/index.html

reference:
  - title: "Filebacked Big Matrices"
    desc: "Constructors and methods for class FBM."
    contents:
      - FBM-class
      - FBM-methods
      - FBM.code256-class
      - big_attach
      - big_copy
  - title: "Statistical models"
    desc: "Column-wise and sparse multivariate linear and logistic models."
    contents:
      - big_univLinReg
      - big_univLogReg
      - big_spLinReg
      - big_spLogReg
      - AUC
      - pcor
  - title: "SVD (and PCA)"
    contents:
      - big_SVD
      - big_randomSVD
  - title: "Matrix operations"
    contents:
      - big_cor
      - big_crossprodSelf
      - big_tcrossprodSelf
      - big_prodVec
      - big_prodMat
      - big_cprodVec
      - big_cprodMat
  - title: "Plot and predict methods"
    contents:
      - theme_bigstatsr
      - plot.mhtest
      - predict.mhtest
      - predict.big_sp
      - predict.big_sp_list
      - summary.big_sp_list
      - plot.big_sp_list
      - plot.big_SVD
      - predict.big_SVD
      - asPlotlyText
      - pasteLoc
  - title: "Utilities"
    contents:
      - big_colstats
      - big_scale
      - big_counts
      - big_read
      - big_write
      - big_transpose
      - big_increment
      - big_parallelize
      - big_apply
      - block_size
      - plus
      - nb_cores
      - without_downcast_warning
      - sub_bk
      - covar_from_df
      - as_scaling_fun
      - get_beta