Merge branch 'hl7au:master' into master

.env.development

@@ -1,6 +1,2 @@
-V311_VALIDATOR_URL=http://localhost/validatorapi
-V400_VALIDATOR_URL=http://localhost/validatorapi
-V501_VALIDATOR_URL=http://localhost/validatorapi
-V610_VALIDATOR_URL=http://localhost/validatorapi
-V700_BALLOT_VALIDATOR_URL=http://localhost/validatorapi
+FHIR_RESOURCE_VALIDATOR_URL=http://localhost/hl7validatorapi
 REDIS_URL=redis://localhost:6379/0

.env.production

@@ -1,6 +1,3 @@
 REDIS_URL=redis://redis:6379/0
-V311_VALIDATOR_URL=http://validator-service:4567
-V400_VALIDATOR_URL=http://validator-service:4567
-V501_VALIDATOR_URL=http://validator-service:4567
-V610_VALIDATOR_URL=http://validator-service:4567
-V700_BALLOT_VALIDATOR_URL=http://validator-service:4567
+
+FHIR_RESOURCE_VALIDATOR_URL=http://validator-api:3500

.github/ISSUE_TEMPLATE/issue-template.md

@@ -0,0 +1,16 @@
+---
+name: Issue Template
+about: Provide us issues for problems and requests
+title: "[ISSUE] title"
+labels: ''
+assignees: ''
+
+---
+
+Title: A brief and descriptive title for the issue.
+
+Description: A detailed description of the issue, including:
+
+1. Steps to reproduce the issue.
+2. Expected and actual behavior.
+3. Screenshots or another related information (if applicable).

.github/workflows/k8-deploy.yaml

@@ -0,0 +1,165 @@
+name: 'Inferno Deployment to K8'
+
+on:
+  push:
+    branches:
+    - master
+  pull_request:
+    branches:
+    - master
+  workflow_dispatch: # Manual trigger
+
+
+permissions:
+  id-token: write # This is required for requesting the JWT
+  contents: read  # This is required for actions/checkout
+  pull-requests: write # This is required for posting the comment
+
+jobs:
+  terraform-plan:
+    name: 'Terraform Plan'
+    runs-on: ubuntu-latest
+    outputs:
+      tfplanExitCode: ${{ steps.tf-plan.outputs.exitcode }}
+    env:
+      working-dir: "./infra/aws-impl"
+    steps:
+    # Checkout the repository to the GitHub Actions runner
+    - name: Checkout
+      uses: actions/checkout@v4
+
+    # Configure AWS credentials
+    - name: Configure aws credentials
+      uses: aws-actions/configure-aws-credentials@v4
+      with:
+        role-to-assume: arn:aws:iam::471112546300:role/inferno-github-actions-eks-role
+        aws-region: ap-southeast-2
+
+    # Install the latest version of the Terraform CLI
+    - name: Setup Terraform
+      uses: hashicorp/setup-terraform@v3
+      with:
+        terraform_wrapper: false
+
+    # Initialize a new or existing Terraform working directory by creating initial files, loading any remote state, downloading modules, etc.
+    - name: Terraform Init
+      run: terraform init -upgrade
+      working-directory: ${{ env.working-dir }}
+
+    # Checks that all Terraform configuration files adhere to a canonical format
+    # Will fail the build if not
+    - name: Terraform Format
+      run: terraform fmt -check
+      working-directory: ${{ env.working-dir }}
+
+    # Generates an execution plan for Terraform
+    # An exit code of 0 indicated no changes, 1 a terraform failure, 2 there are pending changes.
+    - name: Terraform Plan
+      id: tf-plan
+      working-directory: ${{ env.working-dir }}
+      run: |
+        export exitcode=0
+        terraform plan -detailed-exitcode -no-color -out main.tfplan || export exitcode=$?
+
+        echo "exitcode=$exitcode" >> $GITHUB_OUTPUT
+        
+        if [ $exitcode -eq 1 ]; then
+          echo Terraform Plan Failed!
+          exit 1
+        else 
+          exit 0
+        fi
+        
+    # Save plan to artifacts  
+    - name: Publish Terraform Plan
+      uses: actions/upload-artifact@v4
+      with:
+        name: tfplan
+        path: ${{ env.working-dir }}/main.tfplan
+
+    # Create string output of Terraform Plan
+    - name: Create String Output
+      id: tf-plan-string
+      working-directory: ${{ env.working-dir }}
+      run: |
+        TERRAFORM_PLAN=$(terraform show -no-color main.tfplan)
+        
+        delimiter="$(openssl rand -hex 8)"
+        echo "summary<<${delimiter}" >> $GITHUB_OUTPUT
+        echo "## Terraform Plan Output" >> $GITHUB_OUTPUT
+        echo "<details><summary>Click to expand</summary>" >> $GITHUB_OUTPUT
+        echo "" >> $GITHUB_OUTPUT
+        echo '```terraform' >> $GITHUB_OUTPUT
+        echo "$TERRAFORM_PLAN" >> $GITHUB_OUTPUT
+        echo '```' >> $GITHUB_OUTPUT
+        echo "</details>" >> $GITHUB_OUTPUT
+        echo "${delimiter}" >> $GITHUB_OUTPUT
+        
+    # Publish Terraform Plan as task summary, fails when over 7k characters
+    - name: Publish Terraform Plan to Task Summary
+      working-directory: ${{ env.working-dir }}
+      env:
+        SUMMARY: ${{ steps.tf-plan-string.outputs.summary }}
+      run: |
+        echo "$SUMMARY" >> $GITHUB_STEP_SUMMARY
+      
+    # If this is a PR post the changes
+    - name: Push Terraform Output to PR
+      if: github.event_name == 'pull_request'
+      uses: actions/github-script@v7
+      env:
+        SUMMARY: "${{ steps.tf-plan-string.outputs.summary }}"
+      with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+          script: |
+            const body = `${process.env.SUMMARY}`;
+            github.rest.issues.createComment({
+                issue_number: context.issue.number,
+                owner: context.repo.owner,
+                repo: context.repo.repo,
+                body: body
+            })
+
+  terraform-apply:
+    name: 'Terraform Apply'
+    if: github.ref == 'refs/heads/master' && needs.terraform-plan.outputs.tfplanExitCode == 2
+    runs-on: ubuntu-latest
+    environment: production
+    needs: [terraform-plan]
+    env:
+      working-dir: "./infra/aws-impl"
+
+    steps:
+    # Checkout the repository to the GitHub Actions runner
+    - name: Checkout
+      uses: actions/checkout@v4
+
+    # Configure AWS credentials
+    - name: Configure aws credentials
+      uses: aws-actions/configure-aws-credentials@v4
+      with:
+        role-to-assume: arn:aws:iam::471112546300:role/inferno-github-actions-eks-role
+        aws-region: ap-southeast-2
+
+    # Install the latest version of Terraform CLI and configure the Terraform CLI configuration file with a Terraform Cloud user API token
+    - name: Setup Terraform
+      uses: hashicorp/setup-terraform@v3
+      with:
+        terraform_wrapper: false
+
+    # Initialize a new or existing Terraform working directory by creating initial files, loading any remote state, downloading modules, etc.
+    - name: Terraform Init
+      run: terraform init -upgrade
+      working-directory: ${{ env.working-dir }}
+
+    # Download saved plan from artifacts  
+    - name: Download Terraform Plan
+      uses: actions/download-artifact@v4
+      with:
+        name: tfplan
+        path: ${{ env.working-dir }}
+
+    # Terraform Apply
+    - name: Terraform Apply
+      run: terraform apply -auto-approve main.tfplan
+      working-directory: ${{ env.working-dir }}

.rubocop.yml

@@ -30,6 +30,14 @@ AllCops:
     - 'lib/au_core_test_kit/fhir_resource_navigation.rb'
     - 'lib/au_core_test_kit/date_search_validation.rb'
     - 'lib/au_core_test_kit/custom_groups/v0.3.0-ballot/profile_support_test.rb'
+    - 'lib/au_core_test_kit/generated/v0.3.0-ballot/au_core_test_suite.rb'
+    - 'lib/au_core_test_kit/generator/multiple_or_search_test_generator.rb'
+    - 'lib/au_core_test_kit/generator/multiple_and_search_test_generator.rb'
+    - 'lib/au_core_test_kit/generator/chain_search_test_generator.rb'
+    - 'lib/au_core_test_kit/generator/special_identifier_search_test_generator.rb'
+    - 'lib/au_core_test_kit/special_identifier_search_test.rb'
+    - 'lib/au_core_test_kit/generator/special_identifiers_chain_search_test_generator.rb'
+    - 'lib/au_core_test_kit/generator/include_search_test_generator.rb'
 Style/Documentation:
   Enabled: false
 Layout/LineLength:

CHANGELOG.md

@@ -1,6 +1,119 @@
-# 0.0.1
+# 0.0.15
+* Add conditional/basic skip with a message by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/209
+* Update _include tests by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/212
+* Add separate _include tests by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/217
+
+# 0.0.14
+## AU Core Test Kit changes
+* Update target_profile modification for au-specimen by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/194
+* Add missing data tests by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/195
+* Add validator messages filter by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/202
+## Documentation
+* Update us_core_diffs.md by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/198
+## Other
+* remove old manifest implementation and update ngnix dependency by @KyleOps in https://github.com/hl7au/au-fhir-core-inferno/pull/188
+
+# 0.0.13
+## AU Core Test Kit changes
+* AU Core 1.0.0-preview
+
+# 0.0.12
+## AU Core Test Kit changes
+* Add auto _count search parameter by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/184
+* Add an ability to activate read for first _id search automatically by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/183
+* Update description for the CapabilityStatement group by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/182
+* Update group description for Practitioner, PractitionerRole, Location, and Organization by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/181
+
+# 0.0.11
+## AU Core Test Kit changes
+* Update 0.4.0-preview to 0.4.1-preview by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/171
+* Use gem as validation test suite by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/168
+* Add an ability to run the first search for Patient as read test by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/174
+* Add optional _count search parameter by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/176
+* Update test suite sources by @projkov https://github.com/hl7au/au-fhir-core-inferno/pull/162, https://github.com/hl7au/au-fhir-core-inferno/pull/175, https://github.com/hl7au/au-fhir-core-inferno/pull/177
+## Documentation
+* Update prerequisites by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/169
+## Other
+* Allow direct manifests to use rds during db migration by @KyleOps in https://github.com/hl7au/au-fhir-core-inferno/pull/173
+* Implement Helm Chart for AU FHIR Inferno with Optional NGINX Ingress and Bitnami PostgreSQL by @KyleOps in https://github.com/hl7au/au-fhir-core-inferno/pull/167
+
+# 0.0.10
+* Add new default patient id by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/146
+* Update read tests to use Practitioner, PractitionerRole, Location, Organization by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/157
+* Add test group to validate any resource by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/156
+* Add default values for diagnostic result Observation by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/160
+* Ingress update: remove validator path, update validatorapi path by @KyleOps in https://github.com/hl7au/au-fhir-core-inferno/pull/145
+* Convert postgres deployment to statefulset, add liveness and readiness probe by @KyleOps in https://github.com/hl7au/au-fhir-core-inferno/pull/149
+
+# 0.0.9
+* Fix search for the extension value by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/139
+* Fix multiple date search by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/141
+* Migrate to the HL7 official validator by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/118
+
+# 0.0.8
+* AU Core 0.4.0-preview 
+* Minor changes
+
+# 0.0.7
+* Add search by practitioner id for PractitionerRole test by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/132
+* Generate test kit source files @github-actions in https://github.com/hl7au/au-fhir-core-inferno/pull/133
 
+# 0.0.6
+* Update narrative for validation tests by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/122
+* Update narrative for the Capability Statement group by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/123
+* Add check for support XML by Capability Statement by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/124
+* Change the default URL by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/127
+* Handle special case for combo searches by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/128
+* Add prefix with information about expectaction by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/130
+* Generate test kit source files @github-actions in https://github.com/hl7au/au-fhir-core-inferno/pull/131, https://github.com/hl7au/au-fhir-core-inferno/pull/119, https://github.com/hl7au/au-fhir-core-inferno/pull/129, https://github.com/hl7au/au-fhir-core-inferno/pull/125
+
+# 0.0.5
+* Add reporting issues section to the README by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/109
+* Update search-params file to fix problems with searchDefinitions by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/111
+* Generate test kit source files @github-actions in https://github.com/hl7au/au-fhir-core-inferno/pull/112
+
+# 0.0.4
+* Regenerate test kit source files after updating the IG in https://github.com/hl7au/au-fhir-core-inferno/pull/107
+
+# 0.0.3
+* 62 add multiple and by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/75
+* 48 add missing comparators by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/76
+* WIP: Add chained search for patient:Patient.identifier by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/82
+* Change tx server from test to dev by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/68
+* Merge new auto generated tests by @github-actions in https://github.com/hl7au/au-fhir-core-inferno/pull/83
+* Fix optional? method by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/84
+* Merge new auto generated tests by @github-actions in https://github.com/hl7au/au-fhir-core-inferno/pull/85
+* 80 ihi dva chained by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/86
+* Merge new auto generated tests by @github-actions in https://github.com/hl7au/au-fhir-core-inferno/pull/87
+* Add search for Practitioner IHI-I by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/88
+* Merge new auto generated tests by @github-actions in https://github.com/hl7au/au-fhir-core-inferno/pull/89
+* Merge new auto generated tests by @github-actions in https://github.com/hl7au/au-fhir-core-inferno/pull/90
+* Fix search by identifier by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/104
+* Merge new auto generated tests by @github-actions in https://github.com/hl7au/au-fhir-core-inferno/pull/105
+
+# 0.0.2
+* Spec tests by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/31
+* Summary generator update by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/32
+* Add generate-tests action by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/37
+* Add rubocop as CI step by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/39
+* Update files by rubocop except generated by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/51
+* Update test files by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/53
+* Add build and release pipeline by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/55
+* CICD: Implement Terraform Workflow for EKS Deployment by @KyleOps in https://github.com/hl7au/au-fhir-core-inferno/pull/41
+* Add auth header and value inputs by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/66
+* Remove Location and PractitionerRole from special cases by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/67
+
+# 0.0.1
 * Tests are available for the AU Core 0.3.0-ballot.
 * Searching tests
 * Reading tests
-* Resource validation
+* Resource validation
+
+* Update summary generator by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/10
+* Use terminology server url from the ENV by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/11
+* EKS-Specific Terraform Implementation for Inferno App Deployment by @KyleOps in https://github.com/hl7au/au-fhir-core-inferno/pull/13
+* 0.3.0 ballot march by @ir4y in https://github.com/hl7au/au-fhir-core-inferno/pull/17
+* Add may search params and combo search params by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/27
+* Fix descr urls by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/23
+* Add PSQL as docker compose service by @projkov in https://github.com/hl7au/au-fhir-core-inferno/pull/26
+

Gemfile

@@ -11,3 +11,5 @@ end
 gem 'pg', '~> 1.5'
 gem 'rubocop', '~> 1.63.2'
 gem 'rubocop-erb', '~> 0.3.0'
+gem 'sqlite3', '~> 1.4'
+gem 'validation_test_kit', github: 'beda-software/validation-test-kit', ref: '3438159ae5860216d37c559725fbfdc316ad745c'