Lab #0. Data initialization.ipynb

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    "<table width=\"100%\" border=\"0\">\n",
    "<tr>\n",
    "<td width=\"50%\" bgcolor=\"#FFF\" border=\"1\">\n",
    "<a href=\"https://www.health-samurai.io/\">\n",
    "<img src=\"images/health-samurai.png\" alt=\"Health Samurai\" align=\"left\" />\n",
    "</a>\n",
    "</td>\n",
    "<td width=\"50%\" bgcolor=\"#FFF\">\n",
    "<a href=\"http://beda.software/\">\n",
    "<img src=\"images/beda-software.png\" alt=\"Beda.Software\" align=\"right\" />\n",
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   "source": [
    "# Lab #0. Data initialization\n",
    "This notebook initializes dataset for prepared laboratory works."
   ]
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   "source": [
    "### Import library"
   ]
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   "source": [
    "import os  \n",
    "\n",
    "import fhirpy\n",
    "\n",
    "from initialize import import_dataset"
   ]
  },
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   "source": [
    "### Create an instance of connection"
   ]
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   "source": [
    "client = fhirpy.FHIRClient(\n",
    "    url=os.environ['BOX_URL'] + '/fhir', \n",
    "    authorization=os.environ['BOX_AUTHORIZATION'])"
   ]
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   "cell_type": "markdown",
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   "source": [
    "# Initialize"
   ]
  },
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    "Run the next command to import prepared dataset.  \n",
    "The dataset contains 27 patients with related data."
   ]
  },
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   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
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    "dataset_path = './dataset'\n",
    "import_dataset(client, './dataset')\n"
   ]
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   "metadata": {},
   "source": [
    "# Check"
   ]
  },
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   "metadata": {},
   "source": [
    "Now, we are going to check import results. Run the next command. It should return 27. It means, 27 patients were imported to the database."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "client.resources('Patient').count()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
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    "<table width=\"100%\" border=\"0\">\n",
    "<tr>\n",
    "<td width=\"50%\" bgcolor=\"#FFF\" border=\"1\">\n",
    "<a href=\"https://www.health-samurai.io/\">\n",
    "<img src=\"images/health-samurai.png\" alt=\"Health Samurai\" align=\"left\" />\n",
    "</a>\n",
    "</td>\n",
    "<td width=\"50%\" bgcolor=\"#FFF\">\n",
    "<a href=\"http://beda.software/\">\n",
    "<img src=\"images/beda-software.png\" alt=\"Beda.Software\" align=\"right\" />\n",
    "</a>\n",
    "</td>\n",
    "</tr>\n",
    "</table>"
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