Update emd_reader.py #411
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| name: build | |
| env: | |
| PYTHON_MAIN_VERSION: 3.9 | |
| on: | |
| pull_request: | |
| branches: | |
| - '*' | |
| push: | |
| branches: | |
| - '*' | |
| tags: | |
| - '*' | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| matrix: | |
| python-version: ["3.10", "3.9", "3.8"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update -qq | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: install package | |
| run: | | |
| pip install . | |
| pip list | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --ignore=F821 | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics --ignore=F821 | |
| - name: Generate coverage report | |
| run: | | |
| pip install pytest pytest-cov pywget | |
| pytest --cov=./ --cov-report=xml | |
| pip install -r extras_require.txt | |
| pytest --cov=./ --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| if: ${{ matrix.python-version == env.PYTHON_MAIN_VERSION }} | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage.xml | |
| # directory: ./coverage/reports/ | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: true | |
| # path_to_write_report: ./coverage/codecov_report.txt | |
| verbose: true | |
| - name: Documentation build | |
| if: ${{ matrix.python-version == env.PYTHON_MAIN_VERSION && github.ref == 'refs/heads/master'}} | |
| run: | | |
| pip install sphinx>=3.1.1 sphinx-gallery sphinx-rtd-theme>=0.5.0 sphinx-autodoc-typehints numpydoc wget nbsphinx | |
| sudo apt-get install pandoc | |
| sphinx-build -b html -aET docs/source docs/_build/html | |
| touch docs/_build/html/.nojekyll | |
| - name: Deploy to GitHub Pages | |
| if: ${{ matrix.python-version == env.PYTHON_MAIN_VERSION && github.ref == 'refs/heads/master'}} | |
| uses: crazy-max/ghaction-github-pages@v2 | |
| with: | |
| target_branch: gh-pages | |
| build_dir: docs/_build/html | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload to PyPi | |
| if: startsWith( github.ref, 'refs/tags') && matrix.python-version == env.PYTHON_MAIN_VERSION | |
| env: | |
| PYPI_TOKEN_PASSWORD: ${{ secrets.PYPI_API_TOKEN }} | |
| run: | | |
| pip install wheel twine | |
| python setup.py sdist bdist_wheel | |
| twine upload --username "__token__" --password $PYPI_TOKEN_PASSWORD dist/* |